View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17805_low_9 (Length: 449)
Name: NF17805_low_9
Description: NF17805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17805_low_9 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 8138043 - 8137622
Alignment:
| Q |
18 |
aattatacacaaaattgaacggatatgtgtgggtacgagcattcttgtttccaccacatccagaaataatatattttttggtaactgccctataagtcaa |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8138043 |
aattatacgcaaaattgaacggatatgtgtgggtacgagcattcttgtttccaccccatccagaaataatatattttttagtaactgccctataagtcaa |
8137944 |
T |
|
| Q |
118 |
gttcggtgcgcgcatcatatatcaccaaatgcttcttgttatatacatggtgcttaatcggaaaccattttacatttcacaactaatattaatgttgatc |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8137943 |
gttcggtgcgcacatcatatatcaccaaatgcttcttgttatatacatggtgcttaatcggaaaccattttacatttcacaactaatattaatgttgatc |
8137844 |
T |
|
| Q |
218 |
tttgtgctatttgcatgggttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaacattgacatttattaaggac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
8137843 |
tttgtgctatttgcatgggttacagatcacttgggatcatggttttagagacatcatttatgagtcagattctcaaacaacattgacatttattaaagac |
8137744 |
T |
|
| Q |
318 |
atgttctacttactcatccttgcgctactcttatggacaacattcattcttttatgttcagagattgaaatgttgtttttgctcatacacgcgtgaagaa |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8137743 |
atgttctacttactcatccttgtgctactcttatggacaacattcattcttttatgttgagagattgaaatgttgtttttgctcatacacgcgtgaagaa |
8137644 |
T |
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| Q |
418 |
atctgttgtccattttcttcga |
439 |
Q |
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| T |
8137643 |
atctgttgtccatttttttcga |
8137622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 12303572 - 12303453
Alignment:
| Q |
199 |
actaatattaatgttgatctttgtgctatttgc-atgggttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaa |
297 |
Q |
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||||||||||||| ||||||| ||||||||| | |||| || || | |||||||| ||||| |||||| ||||||||||| ||| ||| ||||||||| |
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| T |
12303572 |
actaatattaatgctgatcttcgtgctattttctatggattgcaacttacttgggaccatggatttagaaacatcatttgttagttagactctcaaacat |
12303473 |
T |
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| Q |
298 |
cattgacatttattaaggac |
317 |
Q |
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| T |
12303472 |
ctttgacttttatcaaggac |
12303453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 31795240 - 31795178
Alignment:
| Q |
232 |
atgggttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaa |
294 |
Q |
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| T |
31795240 |
atgggttacaaatcacttgggatcttggttttagggatatcatttgtgagtcagactctcaaa |
31795178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 2926632 - 2926699
Alignment:
| Q |
236 |
gttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaacattga |
303 |
Q |
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| T |
2926632 |
gttacaaataacttaggatcatggttttagagatatcatttatgagtcagactctcaaacgacattga |
2926699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 32494411 - 32494348
Alignment:
| Q |
240 |
cagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaacattga |
303 |
Q |
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| T |
32494411 |
cagatcacttggaatcttagttttagagacatcatttgtgagttatattctcaaacgacattga |
32494348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 41728 - 41794
Alignment:
| Q |
232 |
atgggttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaac |
298 |
Q |
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| T |
41728 |
atgggttacaaatcacttgggatcttgattttagggatatcatttgtaagtcagactttcaaacaac |
41794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 7408052 - 7408103
Alignment:
| Q |
246 |
acttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaa |
297 |
Q |
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| T |
7408052 |
acttgggatcttagatttagagacatcatttgcgagtcaaattctcaaacaa |
7408103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 17488613 - 17488656
Alignment:
| Q |
243 |
atcacttgggatcatggttttagagacatcatttgtgagtcaga |
286 |
Q |
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| T |
17488613 |
atcacttgggatcttggttttagtgatatcatttgtgagtcaga |
17488656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 24267148 - 24267088
Alignment:
| Q |
237 |
ttacagatcacttgggatcatggttttagagacatcatttgtgagtcagattctcaaacaa |
297 |
Q |
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||||| ||||||||||||| ||||||||| | ||| ||||||||||| | |||||||||| |
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| T |
24267148 |
ttacaaatcacttgggatcttggttttaggtatatcttttgtgagtcaaactctcaaacaa |
24267088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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