View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17806_high_2 (Length: 373)
Name: NF17806_high_2
Description: NF17806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17806_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 3433713 - 3434060
Alignment:
| Q |
10 |
aaagggagtccagagaatcattcaaatttgattaaaagcaatcacacatgtgcgtgacagagagacatgatcacatctccatccaaaatcctaaagcatt |
109 |
Q |
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| T |
3433713 |
aaagggagtccggagaatcattcatatttgattaaaagcaatcacacatgtgagtgacagagagacatgatcacatctccattcaaaaccctaaagcatc |
3433812 |
T |
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| Q |
110 |
agggttatggtttctcttgcttatatgtttcattttctaattcaatataaaaattttgctcgagaggaatttaatgcgagacttctgactcacattaact |
209 |
Q |
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| T |
3433813 |
agggttatggtttctcttgcttatatgtttcattttctaattcaatgtgaaaattttgctcgagaggaattcaatacgagacttctaactcacattaact |
3433912 |
T |
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| Q |
210 |
acaaaataatcaatataacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaagagggatgacca |
309 |
Q |
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| T |
3433913 |
acaaaataatcaatttaacatttttatgtagtaatctatatccaaattttgtttatcaattatcatgaggtcttacttgtaacacaaagagggatgacca |
3434012 |
T |
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| Q |
310 |
tgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatc |
357 |
Q |
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| T |
3434013 |
tgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatc |
3434060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 3374932 - 3375027
Alignment:
| Q |
261 |
tttatcaattatcatgaggtcttacttgtaacacaaagagggatgaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattat |
356 |
Q |
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| T |
3374932 |
tttatcaattatcatgagatcttacttgtaaaacaaagagtgatgcccatgcaatggtagaaatgattagtaaaatggaacctaaaaaccaattat |
3375027 |
T |
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