View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17806_low_1 (Length: 713)

Name: NF17806_low_1
Description: NF17806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17806_low_1
NF17806_low_1
[»] chr3 (7 HSPs)
chr3 (20-697)||(48922554-48923231)
chr3 (20-243)||(5739490-5739713)
chr3 (20-243)||(5776602-5776825)
chr3 (97-217)||(48607008-48607128)
chr3 (51-121)||(32812618-32812688)
chr3 (20-69)||(48607131-48607180)
chr3 (51-121)||(776397-776466)
[»] chr2 (2 HSPs)
chr2 (20-273)||(9794969-9795219)
chr2 (20-238)||(43784756-43784974)
[»] chr8 (4 HSPs)
chr8 (20-243)||(26665923-26666146)
chr8 (20-238)||(4783170-4783385)
chr8 (132-238)||(39479413-39479519)
chr8 (71-139)||(39478724-39478789)
[»] chr1 (2 HSPs)
chr1 (20-213)||(23761116-23761309)
chr1 (450-547)||(3258145-3258242)
[»] chr6 (2 HSPs)
chr6 (20-243)||(30338620-30338843)
chr6 (191-236)||(631302-631347)
[»] chr4 (1 HSPs)
chr4 (20-243)||(22734445-22734668)


Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 20 - 697
Target Start/End: Original strand, 48922554 - 48923231
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
48922554 atatagaataaagaagagtgttctccgtgtaaaatgtcgtttaccgtgaaatatttcgtaacgtatgatgataaatgtaaaacgttaacaataactagac 48922653  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48922654 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 48922753  T
220 tcttcgtttatatttcattcggtatcgtaagggtcaaaagtctagtttatataataacacttctgttttcaatattttgaccgattttctttttcttttc 319  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48922754 tcttcgtttatatttcattcggtatcgcacggatcaaaagtctagtttatataataacacttctgttttcaatattttgaccgattttctttttcttttc 48922853  T
320 aaattgagatgtcattattttgttgacctaagacacgaaatatctcaaggccggtatcgaatatagccatacagataacaaaatcatgcaagtgtgaatt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
48922854 aaattgagatgtcattattttgttgacctaagacacgaaatatctcaaggccggcatcgaatatagccatacagataacaaaatcatgcaagtgtgaatt 48922953  T
420 tacttcgggttttccacatccagaattattattcttccagaaatggcagtggcaagtgctgctgcgaaattaggatctcttgtcaaagaagtagccattt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48922954 tacttcgggttttccacatccagaattattattcttccagaaatggcagtggcaagtgctgctgcgaaattaggatctcttgtcaaagaagtagccattt 48923053  T
520 gctgaactaataactgctggatagatgacttatgggaatcatcaactaccaattgtcttggctggaccaagtcaagctttgaagcttgagctgtaagcca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
48923054 gctgaactaataactgctggatagatgacttatgggaatcatcaactaccaattgtcttggctggaccaagtcaagctttgaagcttgagctgtacgcca 48923153  T
620 attaattggtgaggacgaggatgctggaactaaattatatgtaggggttgtttcactttggtttgaactagtgagtga 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48923154 attaattggtgaggacgaggatgctggaactaaattatatgtaggggttgtttcactttggtttgaactagtgagtga 48923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 5739713 - 5739490
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||| ||||| |||||    
5739713 atatagaagaaagaagagtgttctccctatcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagac 5739614  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
5739613 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttatcatcctacttttattgtttactatacattcattatgctataact 5739514  T
220 tcttcgtttatatttcattcggta 243  Q
    | ||||||||||||||||| ||||    
5739513 ttttcgtttatatttcatttggta 5739490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 5776825 - 5776602
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||| ||||| |||||    
5776825 atatagaagaaagaagagtgttctccctatcaaatgtcgtttaccatgaaatattttgtaatgtatgatgatgaatgtaaaacgttaataataactagac 5776726  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
5776725 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttatcatcctacttttattgtttactatacattcattatgctataact 5776626  T
220 tcttcgtttatatttcattcggta 243  Q
    | ||||||||||||||||| ||||    
5776625 ttttcgtttatatttcatttggta 5776602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 48607128 - 48607008
Alignment:
97 taaaacgttaacaataattagactatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttac 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
48607128 taaaacgttaacaataactagactatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttatcatactacttttattggttac 48607029  T
197 tatacattcattatgctataa 217  Q
    | ||||||||||||| |||||    
48607028 tttacattcattatgttataa 48607008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 32812688 - 32812618
Alignment:
51 aaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagacta 121  Q
    ||||| |||||| |||||||||||| |||| |||| ||||| || ||||||| ||||||||||||||||||    
32812688 aaatgacgtttatcatgaaatattttgtaatgtataatgatgaacataaaactttaacaataattagacta 32812618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 48607180 - 48607131
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaa 69  Q
    |||||||||||||||||||||||||| | | ||||||| |||||||||||    
48607180 atatagaagaaagaagagtgttctccctatcaaatgtcatttaccatgaa 48607131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 776397 - 776466
Alignment:
51 aaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagacta 121  Q
    ||||| |||||| |||||||||||| |||| |||| ||||| |  ||||||| ||||||||||||||||||    
776397 aaatgacgtttatcatgaaatattttgtaatgtataatgatgac-ataaaactttaacaataattagacta 776466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 9794969 - 9795219
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
9794969 atatagaagaatgaagagtgttctccttatcaaatgtcgtttaccatgaaatatttcgtaacatatgatgataaatgtaaaacgttaacaataactagac 9795068  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
9795069 tatg-ccttatcgatttgttatcattattttaaattatggctaacttaaactttatcatgctacttttattggttactatacattcattatgctataact 9795167  T
220 tcttcgtttatatttcattcggtatcgtaagggtcaaaagtctagtttatataa 273  Q
    | ||||||||||||||||| ||  ||| | |||||||||||||||| |||||||    
9795168 tattcgtttatatttcatttgg--tcgcacgggtcaaaagtctagtatatataa 9795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 43784756 - 43784974
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||    
43784756 atatagaagaaagaagagtgttctccctatcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacattaacaataactagac 43784855  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
43784856 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttatcatgctacttttattggttactatacattcattatgttataact 43784955  T
220 tcttcgtttatatttcatt 238  Q
    | |||||||||||||||||    
43784956 tattcgtttatatttcatt 43784974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 26665923 - 26666146
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||     
26665923 atatagaagaaagaagagtgttctccctatcaaatgtcgttaaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactagaa 26666022  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
26666023 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttatcatgctacttttattggttactatacattcattatgttataact 26666122  T
220 tcttcgtttatatttcattcggta 243  Q
    | ||||||||||||||||| ||||    
26666123 tattcgtttatatttcatttggta 26666146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 4783170 - 4783385
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    |||||||||||||||||||||||||  | | ||||||||||||||||||| |||||| |||||||||||||   || |||||| |||||||||| |||||    
4783170 atatagaagaaagaagagtgttctctctattaaatgtcgtttaccatgaattatttcataacgtatgatga---atgtaaaacattaacaataactagac 4783266  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||    
4783267 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttatcatgctatttttattggttattgtacattcattatgctataact 4783366  T
220 tcttcgtttatatttcatt 238  Q
    | |||| ||||||||||||    
4783367 tattcgattatatttcatt 4783385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 39479413 - 39479519
Alignment:
132 gatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataacttcttcgtttata 231  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||    
39479413 gatttgttatcattattttaaattagggttaacttaaactttatcatgctatttttattggttactatacatttattatgctataacttattcatttata 39479512  T
232 tttcatt 238  Q
    |||||||    
39479513 tttcatt 39479519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 39478724 - 39478789
Alignment:
71 tatttcgtaacgtatgatgataaatataaaacgttaacaataattagactatgaccttatcgatttgtt 139  Q
    ||||||||||||||||||||   || ||||||||||||||||| ||||||||||| |||||||||||||    
39478724 tatttcgtaacgtatgatga---atgtaaaacgttaacaataactagactatgacgttatcgatttgtt 39478789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 23761116 - 23761309
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
23761116 atatagaagaaagaatagtgttctccctatcaaatgtcgtttaccatgaaatatttcgtaacgtatgatgatgaatgtaaaacgttaacaataactagac 23761215  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgct 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
23761216 tatgaccttatcgatttgttatcattattttaaattagggctaacttaaactttattatgctacttttattggttactatacattcattatgct 23761309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 3258145 - 3258242
Alignment:
450 attcttccagaaatggcagtggcaagtgctgctgcgaaattaggatctcttgtcaaagaagtagccatttgctgaactaataactgctggatagatga 547  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||  |||||||||||||||||||||| ||||| || || ||||||||||||||    
3258145 attcttccagaaatagcagtggcaagtgctgcagtgaaattaggatcatttgtcaaagaagtagccatttgttgaaccaaaaattgctggatagatga 3258242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 30338843 - 30338620
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    ||||||||||||||||| |||||| | | | |||||||||||||||||||||||||||||||||| | |||  ||| ||||| ||||||||||| |||||    
30338843 atatagaagaaagaagaatgttctacctatcaaatgtcgtttaccatgaaatatttcgtaacgtaagttgacgaatgtaaaatgttaacaataactagac 30338744  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
30338743 tatgaccttatcgatttgttatcattattttaaattagggcaaacttaaactttatcatgctacttttatttgttactatacattcattatgctataact 30338644  T
220 tcttcgtttatatttcattcggta 243  Q
    | ||||||||||||||||| ||||    
30338643 tattcgtttatatttcatttggta 30338620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 631347 - 631302
Alignment:
191 ggttactatacattcattatgctataacttcttcgtttatatttca 236  Q
    |||||||||| | ||||||||||||||||| || ||||||||||||    
631347 ggttactatatactcattatgctataacttatttgtttatatttca 631302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22734445 - 22734668
Alignment:
20 atatagaagaaagaagagtgttctccttgtaaaatgtcgtttaccatgaaatatttcgtaacgtatgatgataaatataaaacgttaacaataattagac 119  Q
    ||||||||||||||||| |||||||| | | |||||| ||| |||||||||||||  | ||||||||||||| ||| ||||||||||||||||| |||||    
22734445 atatagaagaaagaagaatgttctccctatcaaatgttgttaaccatgaaatattctgcaacgtatgatgatgaatgtaaaacgttaacaataactagac 22734544  T
120 tatgaccttatcgatttgttatcattattttaaattaggactaacttaaactttgtcatgctacttttattggttactatacattcattatgctataact 219  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||    
22734545 tatgaccttatcgatttgttatcattattttatattagggctaacttaaactttatcatgctacttctattggttactatacattcattatcctatacct 22734644  T
220 tcttcgtttatatttcattcggta 243  Q
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22734645 tactcgtttatatttcatttggta 22734668  T

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