View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17806_low_3 (Length: 409)

Name: NF17806_low_3
Description: NF17806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17806_low_3
NF17806_low_3
[»] chr3 (8 HSPs)
chr3 (117-394)||(32593314-32593592)
chr3 (15-63)||(20485617-20485665)
chr3 (15-65)||(14043979-14044029)
chr3 (15-65)||(7941052-7941102)
chr3 (8-65)||(34645504-34645561)
chr3 (8-65)||(45076324-45076381)
chr3 (16-65)||(31977601-31977650)
chr3 (16-65)||(52515070-52515119)
[»] chr8 (8 HSPs)
chr8 (5-63)||(40740850-40740908)
chr8 (5-65)||(41472085-41472145)
chr8 (15-63)||(16939324-16939372)
chr8 (8-58)||(7120849-7120899)
chr8 (14-43)||(20861946-20861975)
chr8 (8-65)||(34892883-34892940)
chr8 (16-65)||(41858467-41858516)
chr8 (15-43)||(31745146-31745174)
[»] chr7 (6 HSPs)
chr7 (9-63)||(11886959-11887013)
chr7 (9-65)||(30845893-30845949)
chr7 (14-65)||(13644363-13644414)
chr7 (8-64)||(28115547-28115603)
chr7 (8-65)||(38555487-38555544)
chr7 (16-65)||(48901521-48901570)
[»] chr1 (9 HSPs)
chr1 (15-65)||(12627181-12627231)
chr1 (15-65)||(5329065-5329115)
chr1 (5-63)||(42290843-42290901)
chr1 (13-63)||(48455439-48455489)
chr1 (8-65)||(4208338-4208395)
chr1 (16-65)||(45780988-45781037)
chr1 (16-65)||(49502901-49502950)
chr1 (5-65)||(21140967-21141027)
chr1 (16-48)||(51461932-51461964)
[»] chr4 (5 HSPs)
chr4 (5-65)||(43176699-43176759)
chr4 (15-65)||(48806427-48806477)
chr4 (14-65)||(37856824-37856875)
chr4 (16-65)||(40962896-40962945)
chr4 (19-63)||(2448921-2448965)
[»] chr2 (4 HSPs)
chr2 (8-65)||(37294283-37294340)
chr2 (5-65)||(16544313-16544373)
chr2 (5-65)||(28139628-28139688)
chr2 (16-48)||(33001946-33001978)
[»] chr5 (3 HSPs)
chr5 (8-64)||(35564204-35564260)
chr5 (15-65)||(41623129-41623179)
chr5 (16-65)||(41622115-41622164)
[»] chr6 (5 HSPs)
chr6 (15-58)||(9391218-9391261)
chr6 (17-63)||(15888882-15888928)
chr6 (16-65)||(455411-455460)
chr6 (15-48)||(14834666-14834699)
chr6 (16-48)||(456123-456155)
[»] scaffold0188 (1 HSPs)
scaffold0188 (15-65)||(27997-28047)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 117 - 394
Target Start/End: Original strand, 32593314 - 32593592
Alignment:
Q  117 tcatataagcgtgtttatattgcgagtggattaatttaagtgctatattgcaaannnnnnn-ataagctgcttgattgcatttaaatccgtctactttta 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||         ||||||| |||||||||||| ||||| |||||||||||    
T  32593314 tcatataagcgtgcttatattgcgagtggattaatttaagtgctatatcgcaatttttttttataagcttcttgattgcattaaaatctgtctactttta 32593413  T
Q  216 aaaagttgttgtctcttttgaatcacacataaaagtgtgataaactttggcaaatttaaactattcatgttttactttctttgtttgtttctatatatat 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32593414 aaaagttgttgtctcttttgaatcacacatgaaagtgtgataaacttttgcaaatttaaactattcatgttttactttctttgtttgtttctatatatat 32593513  T
Q  316 tttttaatttatgtacaagctgcctgatctcnnnnnnnaagtggtgcaactgtaagtaattttttcttcctactctttc 394  Q
    |||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||    
T  32593514 tttttaatttatgtacaagctgcctgatctctttttttgagttgtgcaactgtaagtaattttttcttcctactctttc 32593592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 20485617 - 20485665
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  20485617 tatttgggtaaattactcgtgtttctcagccaaactaaatgtgtgaaca 20485665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 14043979 - 14044029
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  14043979 tatttgggtaaattactcgtgtttctcagccaaactaaatgtgtaaacaac 14044029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 7941102 - 7941052
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  7941102 tatttaggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 7941052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34645561 - 34645504
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| |||||| ||||||||||||||||||||||| |||  ||||||||| ||||||    
T  34645561 cgaaggatatttaggtaaattactcgtgtttctcagccaaggtaaatgtgtcaacaac 34645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 45076324 - 45076381
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||||||||||||||||| |||||||| ||| | ||| |||||||||||    
T  45076324 cgaaggatatttgggtaaattactcgtatttctcagccaaaccaaaagtgtgaacaac 45076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 31977650 - 31977601
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  31977650 atttgggtaaattactcgtgtttctcagccaatacatatgtgtcaacaac 31977601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 52515070 - 52515119
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||| ||||||||||||||| |||| || |||||| ||||||    
T  52515070 atttgggtaaatcactcgtgtttctcagccaatgtatatgtgtcaacaac 52515119  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 40740908 - 40740850
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    |||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  40740908 tgtcgaaggatatttgggtaaattactcgtgtttctcagccaaaccaaatgtgtgaaca 40740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 41472085 - 41472145
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||  ||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  41472085 tgtcgaagggtatttgggtaaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 41472145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16939372 - 16939324
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    |||||||||||||||||||||||||||||  || | |||||||||||||    
T  16939372 tatttgggtaaattactcgtgtttctcagcaaaaccaaatgtgtgaaca 16939324  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 7120899 - 7120849
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgt 58  Q
    ||||| |||||| | ||||||||||||||||||||| ||| ||||||||||    
T  7120899 cgaaggatatttagataaattactcgtgtttctcagccaaactaaatgtgt 7120849  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 20861946 - 20861975
Alignment:
Q  14 atatttgggtaaattactcgtgtttctcag 43  Q
    ||||||||||||||||||||||||||||||    
T  20861946 atatttgggtaaattactcgtgtttctcag 20861975  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 34892883 - 34892940
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||| ||||||||||| |||||||||| |||   |||||||||||||||    
T  34892883 cgaaggatatttgagtaaattactcatgtttctcagccaaatcaaatgtgtgaacaac 34892940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 41858516 - 41858467
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||| ||||||||||||||||||||| |||| || |||||| ||||||    
T  41858516 atttggataaattactcgtgtttctcagccaatgtatatgtgtcaacaac 41858467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 31745174 - 31745146
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcag 43  Q
    |||||||||||||||||||||||||||||    
T  31745174 tatttgggtaaattactcgtgtttctcag 31745146  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 11886959 - 11887013
Alignment:
Q  9 gaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    |||| ||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  11886959 gaaggatatttgggtaaattactcgtgtttcttagccaaactaaatgtgtgaaca 11887013  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 30845949 - 30845893
Alignment:
Q  9 gaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||||||||||||||| ||||||||||||  ||| | |||||||||||||||    
T  30845949 gaagaatatttgggtaaattattcgtgtttctcaatcaaaccaaatgtgtgaacaac 30845893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 13644414 - 13644363
Alignment:
Q  14 atatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  13644414 atatttgggtaaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 13644363  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 28115547 - 28115603
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaa 64  Q
    ||||| ||||||||||||||||||||||||| |||| ||| | |||||||| |||||    
T  28115547 cgaaggatatttgggtaaattactcgtgtttttcagccaaaccaaatgtgtcaacaa 28115603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 38555487 - 38555544
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||| |||||||||||||||||||| | ||| | |||||| ||||||||    
T  38555487 cgaaggatatttgagtaaattactcgtgtttctcggccaaaccaaatgtctgaacaac 38555544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 48901521 - 48901570
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  48901521 atttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaac 48901570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12627231 - 12627181
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  12627231 tatttgggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 12627181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 5329115 - 5329065
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||||||||    
T  5329115 tatttgggtaaattattcgtgtttctcagccaaaccaaatgtgtgaacaac 5329065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 42290843 - 42290901
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    |||||||| ||||||| ||||||||||||| |||||||| ||| | ||| |||||||||    
T  42290843 tgtcgaaggatatttgagtaaattactcgtatttctcagtcaaaccaaaagtgtgaaca 42290901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 48455489 - 48455439
Alignment:
Q  13 aatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    ||||||||||||||||||||||||||||||  |||   |||||||||||||    
T  48455489 aatatttgggtaaattactcgtgtttctcaaccaaatcaaatgtgtgaaca 48455439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 4208395 - 4208338
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||| |||||||||||||||||||||  ||| | |||||||| ||||||    
T  4208395 cgaaggatatttgagtaaattactcgtgtttctcaatcaaaccaaatgtgtcaacaac 4208338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 45780988 - 45781037
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  45780988 atttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaac 45781037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 49502901 - 49502950
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  49502901 atttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaac 49502950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 21141027 - 21140967
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||| | |||| |||||||||||||||| |||||| ||| | |||||||| ||||||    
T  21141027 tgtcgaaggacatttaggtaaattactcgtgtgtctcagccaaaccaaatgtgtcaacaac 21140967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 51461932 - 51461964
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaat 48  Q
    |||||||||||||||||||||||||||| ||||    
T  51461932 atttgggtaaattactcgtgtttctcagccaat 51461964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 43176699 - 43176759
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||  ||||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  43176699 tgtcgaagggtatttaggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 43176759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 48806477 - 48806427
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||| ||||||||||||||||||||| ||| | |||||||||||||||    
T  48806477 tatttggataaattactcgtgtttctcagccaaaccaaatgtgtgaacaac 48806427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 37856824 - 37856875
Alignment:
Q  14 atatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||| |||||||||||||||||||| || ||| | |||||||||||||||    
T  37856824 atatttaggtaaattactcgtgtttcttagccaaaccaaatgtgtgaacaac 37856875  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 40962945 - 40962896
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  40962945 atttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaac 40962896  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 2448965 - 2448921
Alignment:
Q  19 tgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    |||||||||||||||||||| |||| ||| | |||||||||||||    
T  2448965 tgggtaaattactcgtgtttatcagccaaaccaaatgtgtgaaca 2448921  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 37294340 - 37294283
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| ||||||||||||||||||||||||| |||| ||| ||||| |||| ||||||    
T  37294340 cgaaggatatttgggtaaattactcgtgtttatcagccaaactaaacgtgtcaacaac 37294283  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 16544373 - 16544313
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||| |||||| | ||||||||||||||||||| | ||| | |||||||||||||||    
T  16544373 tgtcgaaggatatttagataaattactcgtgtttctcggccaaaccaaatgtgtgaacaac 16544313  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 28139628 - 28139688
Alignment:
Q  5 tgtcgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||  ||||||  ||||||||||||||||||||| |||   |||||||||||||||    
T  28139628 tgtcgaagggtatttgaataaattactcgtgtttctcagccaaatcaaatgtgtgaacaac 28139688  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 33001978 - 33001946
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaat 48  Q
    |||||||||||||||||||||||||||| ||||    
T  33001978 atttgggtaaattactcgtgtttctcagccaat 33001946  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 35564260 - 35564204
Alignment:
Q  8 cgaagaatatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaa 64  Q
    ||||||||||||| |||||||||||||||||||||  ||| | |||||||| |||||    
T  35564260 cgaagaatatttgagtaaattactcgtgtttctcaaccaaaccaaatgtgtcaacaa 35564204  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 41623129 - 41623179
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||| ||||||||||||  || | |||||||||||||||    
T  41623129 tatttgggtaaattacccgtgtttctcagctaaaccaaatgtgtgaacaac 41623179  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 41622164 - 41622115
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||| |||| ||||||||||||||||| ||| |||||||||| ||||||    
T  41622164 atttgagtaatttactcgtgtttctcagtcaaactaaatgtgtcaacaac 41622115  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 9391218 - 9391261
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgt 58  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  9391218 tatttgggtaaattactagtgtttctcagccaaactaaatgtgt 9391261  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15888882 - 15888928
Alignment:
Q  17 tttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaaca 63  Q
    ||||||||||||||||||||||||||| ||| | |||||||| ||||    
T  15888882 tttgggtaaattactcgtgtttctcagccaaaccaaatgtgtaaaca 15888928  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 455460 - 455411
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    |||||||||||||||||||||||||||| ||||  | |||||| ||||||    
T  455460 atttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaacaac 455411  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 14834699 - 14834666
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaat 48  Q
    ||||||||||||||||||||||||||||| ||||    
T  14834699 tatttgggtaaattactcgtgtttctcagccaat 14834666  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 456123 - 456155
Alignment:
Q  16 atttgggtaaattactcgtgtttctcagacaat 48  Q
    |||||||||||||||||||||||||||| ||||    
T  456123 atttgggtaaattactcgtgtttctcagccaat 456155  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 27997 - 28047
Alignment:
Q  15 tatttgggtaaattactcgtgtttctcagacaatctaaatgtgtgaacaac 65  Q
    ||||||||||| ||||||||||||||||| ||| ||| |||||| ||||||    
T  27997 tatttgggtaatttactcgtgtttctcagccaaactacatgtgtcaacaac 28047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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