View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17806_low_5 (Length: 323)
Name: NF17806_low_5
Description: NF17806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17806_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 7503408 - 7503164
Alignment:
| Q |
19 |
ctgccaacaaaaaagaacatagtagattattatggatgataaaaaacaacataaaattctttataattataaaacaaataggagaaatttaagaaaactt |
118 |
Q |
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| T |
7503408 |
ctgccaacaaaaaagaacatagtagattattatggatgataaaaaacaacataaaattctttataattataaaacaaataggagaaatttaagagaactt |
7503309 |
T |
|
| Q |
119 |
acacttattatgcttgtgtaggggctttgactagagtagttacgatccttctatcattcttga-taaaaggacaacttagcagcctaagaaaaagacatg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||| || | ||||||||| ||||||||| |
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| T |
7503308 |
acacttattatgcttgtgtaggggctttgacttgagtagttataatccttctatcattcttgattcaaaggacatctcaacagcctaag--aaagacatg |
7503211 |
T |
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| Q |
218 |
acaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgatagta |
268 |
Q |
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| T |
7503210 |
aaaaaacaagtgtcaa----cagctaaaaatcaagtcttgatatgatagta |
7503164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 7530941 - 7530662
Alignment:
| Q |
19 |
ctgccaacaaaaaagaacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaac |
116 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||| ||| |
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| T |
7530941 |
ctgccaacaaaaataaacatagtaaattattatggatgatgaaaaacaacataaataataatttataattataaaacaaatatgagaaatttaagagaac |
7530842 |
T |
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| Q |
117 |
ttacacttattatgcttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacat |
216 |
Q |
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| T |
7530841 |
ttacacttattatgcttgtgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcagcctaag--aaagacat |
7530744 |
T |
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| Q |
217 |
gacaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
302 |
Q |
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| T |
7530743 |
gacaaaacaagtgtcaaa----agctaaacatacagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
7530662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 7497226 - 7496947
Alignment:
| Q |
19 |
ctgccaacaaaaaagaacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaac |
116 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||| |
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| T |
7497226 |
ctgccaacaaaaataaacatagtatattattatggatgatgaacaacaacataaataatactttataattataaaacaaatatgagaaatttaagagaac |
7497127 |
T |
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| Q |
117 |
ttacacttattatgcttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacat |
216 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||| |||||| |||||||| |
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| T |
7497126 |
ttacacttattattcttgtgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcatcctaag--aaagacat |
7497029 |
T |
|
| Q |
217 |
gacaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
302 |
Q |
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|||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7497028 |
gacaaaacaagtgtcaaa----agctaaacatacagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
7496947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 7522884 - 7522605
Alignment:
| Q |
19 |
ctgccaacaaaaaagaacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaac |
116 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||| |
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| T |
7522884 |
ctgccaacaaaaataaacatagtatattattatggatgatgaacaacaacataaataatactttataattataaaacaaatatgagaaatttaagagaac |
7522785 |
T |
|
| Q |
117 |
ttacacttattatgcttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacat |
216 |
Q |
| |
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||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||||||| |||||||| |
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| T |
7522784 |
ttacactgattatgcttgcgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcagcctaag--aaagacat |
7522687 |
T |
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| Q |
217 |
gacaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
302 |
Q |
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| T |
7522686 |
gacaaaacaagtgtcaaa----agctaaacatacagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattg |
7522605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 27 - 268
Target Start/End: Original strand, 7719595 - 7719832
Alignment:
| Q |
27 |
aaaaaagaacatagtagattattatggatgataaaaaacaacataaaattctttataatta-taaaacaaataggagaaatttaagaaaacttacactta |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||| |
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| T |
7719595 |
aaaaaagaacatagtagattattatggatgataaacaacaacataaaattctttataattaataaaacaaataggagaaatttaagagatctgacactta |
7719694 |
T |
|
| Q |
126 |
ttatgcttgtgtaggggctttgactagagtagttacgatccttctatcattcttgata-aaaggacaacttagcagcctaagaaaaagacatgacaaaac |
224 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| || | |||||||||||| ||||||| ||||| |
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| T |
7719695 |
ttatgcttgtgtaggggctttgacttgagtagttataatccttctatcattcttgattcaaaggacatctcaacagcctaagaaa--gacatgaaaaaac |
7719792 |
T |
|
| Q |
225 |
aagtgtcaaaagctagctagaaatcaagtcttgatatgatagta |
268 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
7719793 |
aagtgtcaaaagctaa----aaatcaagtcttgatatgatagta |
7719832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 7126433 - 7126526
Alignment:
| Q |
166 |
cttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgata |
265 |
Q |
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|
||||||||||||| || |||||||||||| ||||||||||| || ||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7126433 |
cttctatcattctggaaaaaaggacaactcagcagcctaag--aatgacttgacaaaacaattgtcaaa----agctagaaatcaagtcttgatatgata |
7126526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 7484647 - 7484580
Alignment:
| Q |
235 |
agctagctagaaatcaagtcttgatatgatagtattaatatattcaaaacaatttatttaccttattgtagaac |
308 |
Q |
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|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
7484647 |
agctagctagaaatcatgtcatgatatgata------atatattcaaaacaatttatttaccttgttgtagaac |
7484580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 7486061 - 7485988
Alignment:
| Q |
34 |
aacatagtagattattatggatgataaaaaacaacataa--aattctttataattataaaacaaataggagaaa |
105 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| ||| |||||||||| ||||||||||| |||||| |
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| T |
7486061 |
aacatagtagattattatggatgacgagcaacaacataaataatactttataattgtaaaacaaatatgagaaa |
7485988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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