View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17806_low_6 (Length: 300)
Name: NF17806_low_6
Description: NF17806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17806_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 51677319 - 51677044
Alignment:
| Q |
6 |
gacatcatcacacacacttgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccatcatataggacagtt |
105 |
Q |
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| T |
51677319 |
gacataatcagacacaattgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccat---ataggacagtt |
51677223 |
T |
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| Q |
106 |
taccacctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcctatcccaattatttccctatcaattgatgaggcaggact |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51677222 |
taccacctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcccatcccaattatttccctatcaattgatgaggcaggact |
51677123 |
T |
|
| Q |
206 |
acaaaaagggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacacacaca |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51677122 |
acaaaaagggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacacacaca |
51677044 |
T |
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