View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17807_high_2 (Length: 334)
Name: NF17807_high_2
Description: NF17807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17807_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 40019067 - 40019346
Alignment:
| Q |
21 |
agttcattcatagacttcaaccatgactgaatccatgtcttcaatattacctagcagtaagaattaaattattctgtaagtgaatcaaccactgtccaca |
120 |
Q |
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| T |
40019067 |
agttcattcatagacttcaaccatgactgaatccatgtcttcaatattacctagcagtaacaattaaattattctgcaagtgaatcaaccactgtccaca |
40019166 |
T |
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| Q |
121 |
cttaaaggaaatgagggagaaaccttattaggtttgttttctcaatttttcttaaatatttgaatctgaaccatagttaaatcaaacggtgttaaattcc |
220 |
Q |
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| T |
40019167 |
cttaaaggaaatgag--agaaaccttattaggtttgttttctcaatttttcttaaatatttgaatctgaaccttagttaaatcaagcggtgttaaattcc |
40019264 |
T |
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| Q |
221 |
atttttattttccatttagttggtttatcgttccattattctccattttagttcggtgttaaaatcaactataattttgttt |
302 |
Q |
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| T |
40019265 |
atttttattttccatttagttggtttatcgttccattattctccattttagttcggtgttaaaatcaactataattttgttt |
40019346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 28383950 - 28384090
Alignment:
| Q |
122 |
ttaaaggaaatgagggagaaaccttattaggtttgttttctcaatttttcttaaatatttgaatctgaaccatagttaaatcaa--acggtgttaaattc |
219 |
Q |
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| T |
28383950 |
ttaaaggaaatgag--agaaacctttataggtttattttctcaatttttcttaaatacttgaatctgaaccatagttaaatcaagttcgatgttaaattg |
28384047 |
T |
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| Q |
220 |
catttttattttccatttagttggtttatcgttccattattct |
262 |
Q |
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| T |
28384048 |
cttttctatttgccattgacttggttcatcgttccattattct |
28384090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 23460609 - 23460549
Alignment:
| Q |
208 |
ggtgttaaattccatttttattttccatttagttggtttatcgttccattattctccatttt |
269 |
Q |
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| T |
23460609 |
ggtgttaaattgcattct-atttgccatttagttggtttattattccattattctcaatttt |
23460549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 27259429 - 27259317
Alignment:
| Q |
159 |
ttctcaatttttcttaaatatttgaatctgaaccatagttaaatcaa--acggtgttaaattccatttttattttccatttagttggtttatcgttccat |
256 |
Q |
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| T |
27259429 |
ttctcaatttttcttaaatatttgaatctgaaccatagttaaatcaagtttggtgttaaattgcatttctatttgccatttcgttggtttattattccat |
27259330 |
T |
|
| Q |
257 |
tattctccatttt |
269 |
Q |
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||||||| ||||| |
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| T |
27259329 |
tattctcaatttt |
27259317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 17878819 - 17878685
Alignment:
| Q |
137 |
gagaaaccttattaggtttgttttctcaatttttcttaaatatttgaatctgaaccatagttaaatcaa--acggtgttaaattccatttttattttcca |
234 |
Q |
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|||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| | |||||||| | ||| ||||| ||| |
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| T |
17878819 |
gagaaacctttataggtttgttttcacaatttttcttaactatttgaatatgaacaatagttaaatcaagttcaatgttaaatggcttttctatttgcca |
17878720 |
T |
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| Q |
235 |
tttagttggtttatcgttccattattctccatttt |
269 |
Q |
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|||| |||||||||| ||| ||||||||| ||||| |
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| T |
17878719 |
tttacttggtttatccttctattattctcaatttt |
17878685 |
T |
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