View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17807_low_3 (Length: 325)
Name: NF17807_low_3
Description: NF17807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17807_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 13796917 - 13796618
Alignment:
| Q |
11 |
caccatacagtaatattcattttataaaattaaagactaatacataacaagtaaattgataaagtaaattagttgtatagaataatttcattgacagtga |
110 |
Q |
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| T |
13796917 |
caccatacagtaatattcattttataaaattaaagactaatacataacaagtaaattgataaagtaaattacttgtatagaataatttcattgacagtga |
13796818 |
T |
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| Q |
111 |
tggataaaatataaaaatattctctgttaatttcaaaaagccactaagagaatatttcaggtattgtggtgacagcatattacttttccaccaaaacttt |
210 |
Q |
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| T |
13796817 |
tggataaaatataaaaatattctctgttaatttcagaaagccactaagagaatatttcaggtattgtggtgacagcatattacttttccaccaaaacttt |
13796718 |
T |
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| Q |
211 |
aatttattttatcctttgttctaatggaatgtggtagctagagaaaatatagccttattttgagaagatattggaagagctagaatttaggagttaaaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13796717 |
aatttattttatcctttgttctaatggaatgtggtagctagagaaaatatagccttcttttgagaagatattggaagagctagaatttaggagtaaaaat |
13796618 |
T |
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