View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17807_low_4 (Length: 264)
Name: NF17807_low_4
Description: NF17807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17807_low_4 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 46858 - 47108
Alignment:
| Q |
5 |
acttgccctaagtttgatcaaatttgttatgatttgaatattgttttcaatttgtgttttttacttgctagggcgatcctattatttcttgccctctctg |
104 |
Q |
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| T |
46858 |
acttgccctaagtttgatcaaatttgttacgatttgaatattgttttcaatttgtgttttttatttgctagggcgatcctattatttgttgccctctctg |
46957 |
T |
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| Q |
105 |
atggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatac |
204 |
Q |
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| T |
46958 |
atggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaagaatac |
47057 |
T |
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| Q |
205 |
ttaagaatagatgattcgattttcataccaaaatagttattctatattctt |
255 |
Q |
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| T |
47058 |
ttaagaatagatgattcgatttttataccaaaatagttattctattttctt |
47108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 11202932 - 11203194
Alignment:
| Q |
1 |
atagacttgccctaagtttgatcaaatttgttatgatttgaatattgttttcaatttgtgttttttacttgctag--------ggcgatcctattatttc |
92 |
Q |
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| T |
11202932 |
atagacttgccctaagtttgatcaaatttgttacgatttgaatgttgtcttcaatttgtgttttttacttgctaaacgccggcggcgatcctattatttc |
11203031 |
T |
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| Q |
93 |
ttgccctctctgatggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgt |
192 |
Q |
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| T |
11203032 |
ttgccctctctgatggattttctttgaatcgtaatgatgtcggtgctattagtccttgcaacaactgatgttgttatcttaatgatatctccaattctgt |
11203131 |
T |
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| Q |
193 |
ttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctatattctt |
255 |
Q |
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| T |
11203132 |
ttacagggatatttaagaatagatgattcgattttcacaccaaaatagttattctattttctt |
11203194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 20134653 - 20134480
Alignment:
| Q |
82 |
cctattatttcttgccctctctgatggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatc |
181 |
Q |
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| T |
20134653 |
cctattatttcttgccctctctgatggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatc |
20134554 |
T |
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| Q |
182 |
tccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctatattctt |
255 |
Q |
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| T |
20134553 |
tccaattctgtttacaggaatatttaagaatagatgattcgatcttcataccaaagtagttattctattttctt |
20134480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 44357418 - 44357591
Alignment:
| Q |
82 |
cctattatttcttgccctctctgatggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatc |
181 |
Q |
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| T |
44357418 |
cctattatttcttgccctctctgatggattttctttgaatcgtaacgatgccggtgctattaatccttgcaacaactgattgtattatcttaatgatatc |
44357517 |
T |
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| Q |
182 |
tccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctatattctt |
255 |
Q |
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| T |
44357518 |
tccaattctgtttacaggaatatttaagaatagatgattcgatcttcataccaaagtagttattctattttctt |
44357591 |
T |
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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12325273 - 12325336
Alignment:
| Q |
1 |
atagacttgccctaagtttgatcaaatttgttatgatttgaatattgttttcaatttgtgtttt |
64 |
Q |
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| T |
12325273 |
atagacttgccctaagttggatcaaatttgttacgatttaaatattgttttcaatttgtgtttt |
12325336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 4431696 - 4431571
Alignment:
| Q |
135 |
gtgctattaatccttgcaacaactgattgtattatcttaatgatatctccaattctgtttacaggaatacttaagaatagatgattcgattttc------ |
228 |
Q |
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||||||||| | |||||| ||||||||| | | || |||||||| |||| ||||||||||| |||||| |||||| ||||||||| |||||| |
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| T |
4431696 |
gtgctattagttcttgcagcaactgattatgtaattttaatgatgtctcaaattctgtttatgggaatatttaagataagatgattctattttcatttat |
4431597 |
T |
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| Q |
229 |
ataccaaaatagttattctatattct |
254 |
Q |
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| T |
4431596 |
ataccaaaatagttattctattttct |
4431571 |
T |
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