View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17808_high_1 (Length: 956)

Name: NF17808_high_1
Description: NF17808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17808_high_1
NF17808_high_1
[»] chr3 (7 HSPs)
chr3 (19-943)||(43965249-43966173)
chr3 (491-563)||(21513364-21513436)
chr3 (446-509)||(190875-190937)
chr3 (442-493)||(37335003-37335054)
chr3 (450-508)||(38332531-38332589)
chr3 (406-468)||(52931577-52931639)
chr3 (521-562)||(49634087-49634128)
[»] chr8 (6 HSPs)
chr8 (765-857)||(39167832-39167924)
chr8 (37-168)||(39168003-39168134)
chr8 (442-509)||(37158646-37158714)
chr8 (403-462)||(20190187-20190246)
chr8 (428-509)||(16972019-16972100)
chr8 (485-564)||(11521189-11521267)
[»] scaffold0361 (1 HSPs)
scaffold0361 (403-509)||(14044-14150)
[»] chr7 (5 HSPs)
chr7 (481-561)||(18349772-18349852)
chr7 (483-567)||(19098495-19098579)
chr7 (403-462)||(44274699-44274758)
chr7 (439-472)||(3749002-3749035)
chr7 (444-506)||(40561729-40561791)
[»] chr4 (4 HSPs)
chr4 (484-556)||(45013216-45013288)
chr4 (477-563)||(35995224-35995309)
chr4 (524-574)||(11271588-11271638)
chr4 (442-495)||(5920402-5920455)
[»] chr1 (7 HSPs)
chr1 (442-532)||(50845184-50845274)
chr1 (442-563)||(1233301-1233421)
chr1 (428-489)||(34915135-34915196)
chr1 (453-509)||(6568631-6568687)
chr1 (541-574)||(429122-429155)
chr1 (452-509)||(1514392-1514449)
chr1 (450-495)||(7930984-7931029)
[»] chr6 (4 HSPs)
chr6 (427-561)||(7486422-7486561)
chr6 (426-462)||(6364576-6364612)
chr6 (444-576)||(20669651-20669783)
chr6 (442-509)||(882735-882802)
[»] chr5 (4 HSPs)
chr5 (442-509)||(35138992-35139059)
chr5 (444-510)||(4306560-4306626)
chr5 (519-563)||(1102129-1102173)
chr5 (426-563)||(29923237-29923373)
[»] chr2 (2 HSPs)
chr2 (406-557)||(13238801-13238954)
chr2 (415-468)||(38600455-38600508)
[»] scaffold0312 (1 HSPs)
scaffold0312 (541-574)||(1395-1428)


Alignment Details
Target: chr3 (Bit Score: 877; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 19 - 943
Target Start/End: Complemental strand, 43966173 - 43965249
Alignment:
Q  19 ataaatgttgggaagtgtaggacaatgctaccagtcttgctgctcggactaagaagacagatgcaagagaaatccaagtttattatcagcaatactatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43966173 ataaatgttgggaagtgtaggacaatgctaccagtcttgctgctcggactaagaagacagatgcaagagaaatccaagtttattatcagcaatactatga 43966074  T
Q  119 gaactatgtcaaagcacttgaccaaggagagcaggctgacaggtacatacatacatttatttatattagtaatacttcggtgcgacactaacacgctgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43966073 gaactatgtcaaagcacttgaccaaggagagcaggctgacaggtacatacatacatttatttatattagtaatacttcggtgcgacactaacacgctgac 43965974  T
Q  219 acgatcaataattttagaaaatgacaaaattaaatatgtgtcagtgttatgccagtgtttgacacatgtcagacacaccttcaatcagaattgtcgtgca 318  Q
    |||  ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  43965973 acggccaatagttttagaaaatgacaaaattaaatatgtgtcagtgttatgccggtgtttgacacatgtcagacacaccttcgatcagaattgtcgtgca 43965874  T
Q  319 atagagtccactagtgtatgtttgaattagccgcgagctttgttgaagctctgccaaactcaacgccaattaatgggttgaaagttgattttgcaaaatt 418  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43965873 atagagtccactggtgtatgtttgaattagccgcgagctttgttgaagctctgccaaactcaacgccaattaatgggttgaaagttgattttgcaaaatt 43965774  T
Q  419 gatttgtgttaaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttg 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43965773 gatttgtgttaaaagtgaattttaggtaaaatgatttatctttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttc 43965674  T
Q  519 gaaggcaaaaactataaatcctagcttcaagttaaaatcaattcttgaggctaaattattcattcgagaattttcaatactaaaatcaaatttaagtctt 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43965673 gaaggcaaaaactataaatcctagcttcaagttaaaatcaattcttgaggctaaattattcattcgagaattctcaatactaaaatcaaatttaagtctt 43965574  T
Q  619 cagaatcacttttagttctcacaaaagtgaaaccaaacattgatttatgttgtgtgagtcattgtaaaaatggatgggaataattgcttctactatatta 718  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43965573 cagaatcacttgtagttctcacaaaattgaaaccaaacattgatttatgttgtgtgagtcattgtaaaaatggatgggaataattgcttctactatatta 43965474  T
Q  719 tgatttactggtttgtttttgatattcttttccagagcacagcttggtaaagcttaccagaccgccggtgtgctttttgaagtgctttgtgctgttaaca 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43965473 tgatttactggtttgtttttgatattcttttccagagcacagcttggtaaagcttaccagaccgccggtgtgctttttgaagtgctttgtgctgttaaca 43965374  T
Q  819 agactgagaaagtcgaagaagttgctcctgaggttagtcattgtttgaaaattgtgtagttcctgcattgattttctctcagcattcatattttggaggc 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43965373 agactgagaaagtcgaagaagttgctcctgaggttagtcattgtttgaaaattgtgtagttcctgcattgattttctctcagcattcatattttggaggc 43965274  T
Q  919 ttgagtaacatcattgaattttgtg 943  Q
    |||||| ||||||||||||||||||    
T  43965273 ttgagtgacatcattgaattttgtg 43965249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 491 - 563
Target Start/End: Original strand, 21513364 - 21513436
Alignment:
Q  491 aataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatcaattct 563  Q
    ||||| ||||||||||||| | ||||| | || ||||| ||| |||||||||||  |||||||||||||||||    
T  21513364 aataaatttgagtgtaaaaatcacgtttggagtcaaaagctacaaatcctagctctaagttaaaatcaattct 21513436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 509
Target Start/End: Complemental strand, 190937 - 190875
Alignment:
Q  446 aaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    |||||||||||| || || ||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  190937 aaaatgatttatattgga-tacattcacgtgaaagtgagttgaacaataaatttgagtgcaaaa 190875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 37335003 - 37335054
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaat 493  Q
    ||||||| |||||||||| ||||||||||||  | |||||||||||||||||    
T  37335003 aggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaat 37335054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 450 - 508
Target Start/End: Original strand, 38332531 - 38332589
Alignment:
Q  450 tgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaa 508  Q
    ||||||||||||| |||||||||     |||||||||||||||||| ||||||||||||    
T  38332531 tgatttatgtttgtatacattcatggataaatgagttgaacaataaatttgagtgtaaa 38332589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 406 - 468
Target Start/End: Original strand, 52931577 - 52931639
Alignment:
Q  406 attttgcaaaattgatttgtgttaaaagtgaattttaggtaaaatgatttatgtttgaataca 468  Q
    ||||||||||||||||||  ||||||||||| |||   ||||| ||||||||||||| |||||    
T  52931577 attttgcaaaattgattttagttaaaagtgagtttagtgtaaattgatttatgtttggataca 52931639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 562
Target Start/End: Original strand, 49634087 - 49634128
Alignment:
Q  521 aggcaaaaactataaatcctagcttcaagttaaaatcaattc 562  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  49634087 aggcaaaagctacaaatcctagcttcaagttagaatcaattc 49634128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 765 - 857
Target Start/End: Complemental strand, 39167924 - 39167832
Alignment:
Q  765 gtaaagcttaccagaccgccggtgtgctttttgaagtgctttgtgctgttaacaagactgagaaagtcgaagaagttgctcctgaggttagtc 857  Q
    |||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39167924 gtaaagcttaccagactgctggggtgctctttgaagtgctttgtgccgttaacaagactgagaaggtcgaagaagtagctcctgaggttagtc 39167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 39168134 - 39168003
Alignment:
Q  37 aggacaatgctaccagtcttgctgctcggactaagaagacagatgcaagagaaatccaagtttattatcagcaatactatgagaactatgtcaaagcact 136  Q
    |||||||||| |||||||||||  |||||  |||||||||||||||||| |||||||| | ||||||||| ||||| |||||  | ||||||| ||| ||    
T  39168134 aggacaatgcaaccagtcttgcctctcgggttaagaagacagatgcaagggaaatccaggcttattatcaacaatattatgaacaatatgtcagagctct 39168035  T
Q  137 tgaccaaggagagcaggctgacaggtacatac 168  Q
    ||||||||  || ||||| |||||||| ||||    
T  39168034 tgaccaagcggatcaggcagacaggtaaatac 39168003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 37158646 - 37158714
Alignment:
Q  442 aggtaaaatgatttatgt-ttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    |||||||||||||||||| |||| ||||||||| ||||  ||||||||||||||| |||||||||||||    
T  37158646 aggtaaaatgatttatgtcttgattacattcacgtgaaggtgagttgaacaataaatttgagtgtaaaa 37158714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 20190246 - 20190187
Alignment:
Q  403 ttgattttgcaaaattgatttgtgttaaaagtgaattttaggtaaaatgatttatgtttg 462  Q
    ||||||||||| |||||||||  ||||||||||| ||| || ||||||||||||||||||    
T  20190246 ttgattttgcataattgattttggttaaaagtgagtttaagataaaatgatttatgtttg 20190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 509
Target Start/End: Original strand, 16972019 - 16972100
Alignment:
Q  428 taaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    ||||||||| ||  |||||||||||||| ||||||||||||||||  | ||| ||| ||||||||||| |||| || |||||    
T  16972019 taaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaa 16972100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 564
Target Start/End: Original strand, 11521189 - 11521267
Alignment:
Q  485 ttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatcaattctt 564  Q
    |||||||||||||| |||||||| | | ||||| | ||| ||||||||||||| |||| |||||| || |||||||||||    
T  11521189 ttgaacaataattt-gagtgtaagaatcacgtttggaggtaaaaactataaattctagtttcaagatagaatcaattctt 11521267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 403 - 509
Target Start/End: Original strand, 14044 - 14150
Alignment:
Q  403 ttgattttgcaaaattgatttgtgttaaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgag 502  Q
    ||||||||| ||||||||||  || || || ||| ||  ||||||| ||||||||||||| |||||||||  ||||| ||||||||| ||||| ||||||    
T  14044 ttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgag 14143  T
Q  503 tgtaaaa 509  Q
    |||||||    
T  14144 tgtaaaa 14150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 18349852 - 18349772
Alignment:
Q  481 tgagttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatcaatt 561  Q
    ||||||||||||||| ||||||||||||| | ||||| |||| ||||| ||| ||| |||| |||||| ||||||||||||    
T  18349852 tgagttgaacaataaatttgagtgtaaaaatcacgtttgaagtcaaaagctacaaaccctaacttcaaattaaaatcaatt 18349772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 567
Target Start/End: Original strand, 19098495 - 19098579
Alignment:
Q  483 agttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatcaattcttgag 567  Q
    |||||||  |||| ||||||||||||| ||| ||| | |||||||||||| ||||| |||||||||| || |||| |||||||||    
T  19098495 agttgaatgataaatttgagtgtaaaaattatgtttggaggcaaaaactacaaatcttagcttcaagatagaatcgattcttgag 19098579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 44274758 - 44274699
Alignment:
Q  403 ttgattttgcaaaattgatttgtgttaaaagtgaattttaggtaaaatgatttatgtttg 462  Q
    ||||||||||| |||||||||  ||||||||||| ||| || ||||||||||||||||||    
T  44274758 ttgattttgcataattgattttggttaaaagtgagtttaagataaaatgatttatgtttg 44274699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 472
Target Start/End: Complemental strand, 3749035 - 3749002
Alignment:
Q  439 tttaggtaaaatgatttatgtttgaatacattca 472  Q
    ||||||||||||||||||||||||||||||||||    
T  3749035 tttaggtaaaatgatttatgtttgaatacattca 3749002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 40561729 - 40561791
Alignment:
Q  444 gtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgta 506  Q
    ||||| ||||||||||||| |||||||||  | ||| ||||||||||||||  ||||||||||    
T  40561729 gtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgta 40561791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 45013216 - 45013288
Alignment:
Q  484 gttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaat 556  Q
    |||||| |||||||||||| |||||| ||||||| ||| | ||||||||| ||||||| ||||||||||||||    
T  45013216 gttgaataataattttgagagtaaaaattacgtttgaaagaaaaaactatgaatcctaacttcaagttaaaat 45013288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 477 - 563
Target Start/End: Complemental strand, 35995309 - 35995224
Alignment:
Q  477 aaaatgagttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatcaattct 563  Q
    |||||||||||||||||||||| |||||| ||| ||| ||| |||| | |||||||  ||||| |||||||||||| ||||| ||||    
T  35995309 aaaatgagttgaacaataattt-gagtgtgaaaattaagtttgaagtctaaaactaccaatccgagcttcaagttagaatcagttct 35995224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 524 - 574
Target Start/End: Original strand, 11271588 - 11271638
Alignment:
Q  524 caaaaactataaatcctagcttcaagttaaaatcaattcttgaggctaaat 574  Q
    ||||| ||| ||||||||||||||||||| |||||||||| ||||| ||||    
T  11271588 caaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaat 11271638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 495
Target Start/End: Complemental strand, 5920455 - 5920402
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataa 495  Q
    |||||||| |||||||||||||||||||||| || ||||  |||| ||||||||    
T  5920455 aggtaaaaagatttatgtttgaatacattcatctaaaaagaagttcaacaataa 5920402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 532
Target Start/End: Complemental strand, 50845274 - 50845184
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaacta 532  Q
    ||||||||||| ||||| ||| |||| ||||| | ||||||||||||||||||| ||| ||| ||||| |||| || | ||||||||||||    
T  50845274 aggtaaaatgaattatggttggatacgttcacgttaaaatgagttgaacaataaatttaagtataaaaattacatttggaggcaaaaacta 50845184  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 442 - 563
Target Start/End: Complemental strand, 1233421 - 1233301
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatccta 541  Q
    ||||||||| ||||||||||  |||||||||  ||||| |||||| |||||||| ||||||||||||| | | |||   || ||||| ||| ||||||||    
T  1233421 aggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatcatgttcagagccaaaagctacaaatccta 1233322  T
Q  542 gcttcaagttaaaatcaattct 563  Q
    |||| || ||| ||||||||||    
T  1233321 gctt-aaattataatcaattct 1233301  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 34915196 - 34915135
Alignment:
Q  428 taaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaa 489  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||  | ||| |||||||||    
T  34915196 taaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 453 - 509
Target Start/End: Complemental strand, 6568687 - 6568631
Alignment:
Q  453 tttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    ||||||||||||||||||||| | ||||| |||| |||||||| ||| |||||||||    
T  6568687 tttatgtttgaatacattcacataaaaataagtttaacaataaatttaagtgtaaaa 6568631  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 429122 - 429155
Alignment:
Q  541 agcttcaagttaaaatcaattcttgaggctaaat 574  Q
    |||||||||||||||||||||||||||| |||||    
T  429122 agcttcaagttaaaatcaattcttgaggttaaat 429155  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 1514449 - 1514392
Alignment:
Q  452 atttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    |||| |||||| |||||||||  | ||||||||||||||||||| |||| ||||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaa 1514392  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 7930984 - 7931029
Alignment:
Q  450 tgatttatgtttgaatacattcacctgaaaatgagttgaacaataa 495  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||    
T  7930984 tgatttatgattgaatacatttacgtgaaagtgagttgaacaataa 7931029  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 427 - 561
Target Start/End: Complemental strand, 7486561 - 7486422
Alignment:
Q  427 ttaaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa-----tttacgttggaa 521  Q
    |||||||||| ||| ||||||||||||||||||||| |||  ||||  ||||| ||| ||||||||  | ||| |||||||||      ||  ||| | |    
T  7486561 ttaaaagtgagtttaaggtaaaatgatttatgtttggataagttcatgtgaaagtgaattgaacaaacaatttaagtgtaaaaatcatgtttggtttgga 7486462  T
Q  522 ggcaaaaactataaatcctagcttcaagttaaaatcaatt 561  Q
    ||||||||||| ||||| ||| ||||||||||||||||||    
T  7486461 ggcaaaaactacaaatcatagtttcaagttaaaatcaatt 7486422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 6364576 - 6364612
Alignment:
Q  426 gttaaaagtgaattttaggtaaaatgatttatgtttg 462  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6364576 gttaaaagtgaatttaaggtaaaatgatttatgtttg 6364612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 444 - 576
Target Start/End: Original strand, 20669651 - 20669783
Alignment:
Q  444 gtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttggaaggcaaaaactataaatcctagc 543  Q
    |||||||||| ||||||||  ||  || || ||||| ||||||||||  ||| ||||| ||||||| | || || | |||||||||||| || || || |    
T  20669651 gtaaaatgatatatgtttgggtatgttgacgtgaaagtgagttgaaccgtaaatttgaatgtaaaaatcacatttggaggcaaaaactacaattcttaac 20669750  T
Q  544 ttcaagttaaaatcaattcttgaggctaaatta 576  Q
    |||| ||||||| ||||| ||||||| ||||||    
T  20669751 ttcacgttaaaaacaatttttgaggcaaaatta 20669783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 509
Target Start/End: Complemental strand, 882802 - 882735
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    ||||||||||||||||||||| |||||||||    ||| |||||| |||||||| ||||| |||||||    
T  882802 aggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaa 882735  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 35138992 - 35139059
Alignment:
Q  442 aggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaa 509  Q
    |||||||||||||||||||   |||||||||  ||||| ||||||||||||||| |||||||| ||||    
T  35138992 aggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggaaaa 35139059  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 444 - 510
Target Start/End: Complemental strand, 4306626 - 4306560
Alignment:
Q  444 gtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaat 510  Q
    ||||||||||||||||||| |||||||||  | |||| || ||||||||||| ||| ||||||||||    
T  4306626 gtaaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaat 4306560  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 1102173 - 1102129
Alignment:
Q  519 gaaggcaaaaactataaatcctagcttcaagttaaaatcaattct 563  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  1102173 gaagtcaaaagctacaaatcctagcttcaagttaaaatcaattct 1102129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 563
Target Start/End: Complemental strand, 29923373 - 29923237
Alignment:
Q  426 gttaaaagtgaattttaggtaaaatgatttatgtttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaatttacgttggaaggca 525  Q
    ||||||||||||||  | || || || |||||||||  |||||||| | | ||| |||||| |||| ||| ||||||||||||| | |||||   ||  |    
T  29923373 gttaaaagtgaattgaatgtgaagtggtttatgtttacatacattcgcgt-aaagtgagttaaacattaaatttgagtgtaaaaatcacgttttgagtta 29923275  T
Q  526 aaaactataaatcctagcttcaagttaaaatcaattct 563  Q
    ||||| | ||||| ||||||||||||| ||||||||||    
T  29923274 aaaacgacaaatcttagcttcaagttagaatcaattct 29923237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 406 - 557
Target Start/End: Complemental strand, 13238954 - 13238801
Alignment:
Q  406 attttgcaaaattgatttgtgttaaaagtgaattttaggtaaaatgattta---tgtttgaatacattcacctgaaaatgagttgaacaataattttgag 502  Q
    |||||| |||||||||||  ||||||||  ||||| ||||||||| |||||   |||||| |||  ||||  ||||| ||||||||| ||||| ||||||    
T  13238954 attttgtaaaattgattttagttaaaagc-aatttaaggtaaaataatttactatgtttggataagttcatgtgaaagtgagttgaaaaataaatttgag 13238856  T
Q  503 tgtaaaatttacgttggaaggcaaaaactataaatcctagcttcaagttaaaatc 557  Q
    ||||||||  | ||| | |||  ||| ||| |||||||||||||| || ||||||    
T  13238855 tgtaaaatccatgtttggaggttaaagctacaaatcctagcttcacgtaaaaatc 13238801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 38600455 - 38600508
Alignment:
Q  415 aattgatttgtgttaaaagtgaattttaggtaaaatgatttatgtttgaataca 468  Q
    |||||||||  ||||||||||| ||| | ||||| |||||||||||||||||||    
T  38600455 aattgattttggttaaaagtgagtttgatgtaaattgatttatgtttgaataca 38600508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 1428 - 1395
Alignment:
Q  541 agcttcaagttaaaatcaattcttgaggctaaat 574  Q
    |||||||||||||||||||||||||||| |||||    
T  1428 agcttcaagttaaaatcaattcttgaggttaaat 1395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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