View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17808_high_4 (Length: 332)
Name: NF17808_high_4
Description: NF17808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17808_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 15180299 - 15180640
Alignment:
| Q |
13 |
cagaaggaattaaagttcaaagttgccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagataatt |
112 |
Q |
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| T |
15180299 |
cagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaatt |
15180398 |
T |
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| Q |
113 |
t-cgggaactgcaattgatcttgctagcaatgacaatgctatcaccgat---------------------attggaattgttgttaggggacaagctaac |
190 |
Q |
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| T |
15180399 |
ttctggaactgcaattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaac |
15180498 |
T |
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| Q |
191 |
ataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataatt |
290 |
Q |
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| T |
15180499 |
ataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataatt |
15180598 |
T |
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| Q |
291 |
gttacatggattataattctatagtcatggaagatcctgttc |
332 |
Q |
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| T |
15180599 |
gttacatggattataatagtatagtcatggaagatcctgttc |
15180640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 38859568 - 38859516
Alignment:
| Q |
39 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcgg |
91 |
Q |
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| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcgg |
38859516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 38859387 - 38859253
Alignment:
| Q |
198 |
caggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacat |
297 |
Q |
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| T |
38859387 |
caggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcaggaaattctttaactagaattgacaactgttatat |
38859288 |
T |
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| Q |
298 |
ggattataattctatagtcatggaagatcctgttc |
332 |
Q |
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| T |
38859287 |
ggattatactggtatagtaacggaagaccctgttc |
38859253 |
T |
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