View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17808_low_2 (Length: 534)

Name: NF17808_low_2
Description: NF17808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17808_low_2
NF17808_low_2
[»] chr4 (4 HSPs)
chr4 (1-293)||(51861985-51862272)
chr4 (1-193)||(39482313-39482500)
chr4 (313-534)||(51861710-51861945)
chr4 (191-242)||(7807638-7807689)
[»] chr3 (5 HSPs)
chr3 (52-293)||(22157786-22158028)
chr3 (310-531)||(22158065-22158302)
chr3 (1-88)||(22157708-22157790)
chr3 (209-278)||(9765713-9765782)
chr3 (1-191)||(9765844-9766028)
[»] chr7 (4 HSPs)
chr7 (64-293)||(9332858-9333087)
chr7 (310-534)||(9333124-9333365)
chr7 (1-88)||(9332768-9332849)
chr7 (191-230)||(27273125-27273164)
[»] chr8 (4 HSPs)
chr8 (191-288)||(43651710-43651807)
chr8 (1-56)||(22647852-22647907)
chr8 (64-129)||(22647938-22648003)
chr8 (73-191)||(43651549-43651666)
[»] chr5 (4 HSPs)
chr5 (191-288)||(21114919-21115016)
chr5 (64-129)||(27030052-27030117)
chr5 (73-191)||(21114758-21114875)
chr5 (1-56)||(27030148-27030203)
[»] scaffold0039 (1 HSPs)
scaffold0039 (194-272)||(81348-81426)
[»] scaffold0755 (2 HSPs)
scaffold0755 (64-129)||(5435-5500)
scaffold0755 (1-56)||(5531-5583)
[»] chr2 (2 HSPs)
chr2 (209-283)||(24863748-24863824)
chr2 (23-51)||(24863506-24863534)
[»] chr6 (2 HSPs)
chr6 (1-56)||(13550194-13550249)
chr6 (191-230)||(13550382-13550421)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 51862272 - 51861985
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatagatgat 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||| |||| ||||||    
T  51862272 ctaaatcatccattcatactgaaattgaaattaaaaataagaaatgtaagatgaaa-----gtatgtatctttctctttgttctgaaatcaatggatgat 51862178  T
Q  101 aaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaacaatagaa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  51862177 aaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctagctaaatatagatgaaatgtctcttcaattgtaatatggaacaatagaa 51862078  T
Q  201 ccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattacatatg 293  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51862077 tcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactttgagttatcagaaattacatatg 51861985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 39482313 - 39482500
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatagatgat 100  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||    
T  39482313 ctaaatcatccattcatactgaaattgaatttaaaaataagaagtgtaagatga-----aagtatgtatctttctctttgttctgaaaccaatggatgat 39482407  T
Q  101 aaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482408 aaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctcttcaattgtaatttggaac 39482500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 313 - 534
Target Start/End: Complemental strand, 51861945 - 51861710
Alignment:
Q  313 gaaggctacacaaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataatac 412  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  51861945 gaaggctacaccaaaccaacgttgtctccatatgttggaaaaaatcatatg---ggaattagaaacagataatatgcatagaaatagaaacaaataatac 51861849  T
Q  413 cttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaa----------------ataaggacccacctataacacaaatgaa 496  Q
    ||||||||| ||| ||| |||| |||||||||||| |||||||||||||| |||||                ||||||||||||||||||||||||||||    
T  51861848 cttaattttccttatgatttctgtatcccatgcttgttcagttcttcctggaacaaaaaatgatgaataaagataaggacccacctataacacaaatgaa 51861749  T
Q  497 gaaaacagg-aaaaaatgagtagaacataaaatgatcat 534  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  51861748 gaaaacaggaaaaaaatgagtagaacataaaatgatcat 51861710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 7807638 - 7807689
Alignment:
Q  191 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatataga 242  Q
    |||||||| |||||||| ||||||||||| |||||||||  |||||||||||    
T  7807638 aacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga 7807689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 52 - 293
Target Start/End: Original strand, 22157786 - 22158028
Alignment:
Q  52 tgaaatgaaagta-tgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccct 150  Q
    ||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22157786 tgaaatgaaagaaatgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatgtttccct 22157885  T
Q  151 atctaaatatagatgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaa 250  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22157886 atctaaatatagatgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagcaattagaaaatatagatagaaaaa 22157985  T
Q  251 ctgccataaatcagttactttgagttatcagaaattacatatg 293  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  22157986 ctgccatacattagttactttgagttatcagaaattacatatg 22158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 310 - 531
Target Start/End: Original strand, 22158065 - 22158302
Alignment:
Q  310 aaagaaggctacacaaaaccaatgttgtctccatatgttggaaaaaatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaataa 409  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22158065 aaagaaggctacaccaaacaaatgttttctccatatgttggaaaaaatcatatgcagggaattagaaagagataatatgaatagaaatagaaacaaataa 22158164  T
Q  410 taccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaacaa----------------ataaggacccacctataacacaaat 493  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||| | |||||||                |||||||||||||||||||||||||    
T  22158165 taccttaattttccttatgacttctgtatcccatgcttcttcagttctttccgaaacaaaaaatgatgaataaagataaggacccacctataacacaaat 22158264  T
Q  494 gaagaaaacaggaaaaaatgagtagaacataaaatgat 531  Q
    |||||||||||||||||||||||||||||||| |||||    
T  22158265 gaagaaaacaggaaaaaatgagtagaacataatatgat 22158302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22157708 - 22157790
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 88  Q
    ||||||||||||||||| ||| |||||||||| ||| |||||||||||||     |||||||||||||||||||||||||||||||||    
T  22157708 ctaaatcatccattcatactgaaattgaaattgaaattaagaagtgtaag-----atgaaagtatgtatctttctctttgttctgaaa 22157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 9765782 - 9765713
Alignment:
Q  209 tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttat 278  Q
    ||||||||||||| |||||||| ||||||||||||||| || ||| |||||||||||||||| |||||||    
T  9765782 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttat 9765713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9766028 - 9765844
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaa-taagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaaccaatagatga 99  Q
    |||||| |||||||||| ||  ||||||||||||||| |||||||||| | ||| | |||||   |||||||  ||||||||||||||| || | ||| |    
T  9766028 ctaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatgga-tgaaa---tgtatct--ctctttgttctgaaatcattggatca 9765935  T
Q  100 taaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatttgga 191  Q
    || ||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||||||||||    
T  9765934 tagaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgtaatttgga 9765844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 64 - 293
Target Start/End: Original strand, 9332858 - 9333087
Alignment:
Q  64 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatataga 163  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9332858 atgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttccctatctaaagataga 9332957  T
Q  164 tgaaatgtctcttcaattgtaatttggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatca 263  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  9332958 tgaaatgtctcttcaattgtaatctggaacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaataactgccatagatca 9333057  T
Q  264 gttactttgagttatcagaaattacatatg 293  Q
    ||||||||||||||||||||||||||||||    
T  9333058 gttactttgagttatcagaaattacatatg 9333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 310 - 534
Target Start/End: Original strand, 9333124 - 9333365
Alignment:
Q  310 aaagaaggctacacaaaaccaatgttgtctccatatgttggaaaa-aatcatatgcagggaattagaaacagataatatgcatagaaatagaaacaaata 408  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  9333124 aaagaaggctacaccaaaccaatgttgtctccatatgttggaaaaaaatcatatgtagggaattagaaacagataacatgcatagaaatagaaacaaata 9333223  T
Q  409 ataccttaatttttcttgtgacttctttatcccatgcttcttcagttcttcctgaaac----------------aaataaggacccacctataacacaaa 492  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  9333224 ataccttaattttccttgtgacttctgtatcccatgcttcttcagttcttcctgaaacaaaaaatgatgaataaaaataaggacccacctataacacaaa 9333323  T
Q  493 tgaagaaaacaggaaaaaatgagtagaacataaaatgatcat 534  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  9333324 tgaagaaaacagaaaaaaatgagtacaacataaaatgatcat 9333365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9332768 - 9332849
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaatgaaagtatgtatctttctctttgttctgaaa 88  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    
T  9332768 ctaaatcatccattcatactgaaattgaaattaaaaataagaagtgtaag-----atgaaagtatgtat-tttctctttgttctgaaa 9332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 27273125 - 27273164
Alignment:
Q  191 aacaatagaaccgctcattcctcaattctcattagcaatt 230  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  27273125 aacaatagagccgctcaatcctcaattctcattagcaatt 27273164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 43651710 - 43651807
Alignment:
Q  191 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac 288  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||| ||||||| |||| ||||    
T  43651710 aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctgtcataaatcagttacttagagttattagaagttac 43651807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22647852 - 22647907
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 56  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22647852 ctaaataatccattcatactgaaattgaaattaaaaataagaagtgtaagatgaaa 22647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 22647938 - 22648003
Alignment:
Q  64 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 129  Q
    |||||||||| ||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  22647938 atgtatctttatctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 22648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 43651549 - 43651666
Alignment:
Q  73 tctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtc 172  Q
    |||||||||| ||||| || | ||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | |||||||||||    
T  43651549 tctctttgttatgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtc 43651646  T
Q  173 tctt-caattgtaatttgga 191  Q
    |||| |||||||||||||||    
T  43651647 tcttgcaattgtaatttgga 43651666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 21114919 - 21115016
Alignment:
Q  191 aacaatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttgagttatcagaaattac 288  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| || ||  |||||||||||||||| ||||||| |||| ||||    
T  21114919 aacaatagaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctatcataaatcagttacttagagttattagaagttac 21115016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 27030117 - 27030052
Alignment:
Q  64 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 129  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  27030117 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 27030052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 21114758 - 21114875
Alignment:
Q  73 tctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtc 172  Q
    |||||||||||||||| || | ||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | |||||||||||    
T  21114758 tctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtc 21114855  T
Q  173 tctt-caattgtaatttgga 191  Q
    |||| |||||||||||||||    
T  21114856 tcttgcaattgtaatttgga 21114875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27030203 - 27030148
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 56  Q
    |||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  27030203 ctaaataatccattcatactaaaattgaaattaaaaataagaagtgtaagatgaaa 27030148  T

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Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 81426 - 81348
Alignment:
Q  194 aatagaaccgctcattcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatcagttactttg 272  Q
    ||||||||| |||| |||||||||||||| ||||||  ||||||||| ||||||||||||||| ||||  |||||||||    
T  81426 aatagaacctctcaatcctcaattctcatcagcaatcggcaaatataaatagaaaaactgccacaaatttgttactttg 81348  T

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Target: scaffold0755 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 5500 - 5435
Alignment:
Q  64 atgtatctttctctttgttctgaaaccaatagatgataaaagagataataaatattgatatttggt 129  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||| ||||||    
T  5500 atgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggt 5435  T

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Target: scaffold0755; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5583 - 5531
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 56  Q
    |||||| |||||||||| ||| ||||||||||||||||   |||||||||||||||    
T  5583 ctaaataatccattcatactgaaattgaaattaaaaat---aagtgtaagatgaaa 5531  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 24863748 - 24863824
Alignment:
Q  209 tcctcaattctcattagcaattagcaaatatagatagaaaaactgccataaatc--agttactttgagttatcagaa 283  Q
    ||||||||| ||||||||||||  || ||||||||||| |||||| ||||||||  |||||||||||||||| ||||    
T  24863748 tcctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatcaaagttactttgagttattagaa 24863824  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 24863506 - 24863534
Alignment:
Q  23 aattgaaattaaaaataagaagtgtaaga 51  Q
    |||||||||||||||||||||||||||||    
T  24863506 aattgaaattaaaaataagaagtgtaaga 24863534  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13550194 - 13550249
Alignment:
Q  1 ctaaatcatccattcatgctggaattgaaattaaaaataagaagtgtaagatgaaa 56  Q
    |||||| |||||||||| ||| ||||||||| |||||||||||||||| |||||||    
T  13550194 ctaaattatccattcatactgaaattgaaataaaaaataagaagtgtatgatgaaa 13550249  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 13550382 - 13550421
Alignment:
Q  191 aacaatagaaccgctcattcctcaattctcattagcaatt 230  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  13550382 aacaatagaacccctcaatcctcaattctcattagcaatt 13550421  T

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