View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17808_low_3 (Length: 341)
Name: NF17808_low_3
Description: NF17808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17808_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 15180625 - 15180958
Alignment:
| Q |
1 |
atggaagatcctgttcaagttcatgtcactaatggttttttcttaggggatgctaatattgttttgaagtcaattaaagggaaagtttatggtttaaata |
100 |
Q |
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| T |
15180625 |
atggaagatcctgttcaagttcatgtcactgatggttttttcttaggagatgctaatattgttttgaagtcaattaaagggaaagtttatggtttaaata |
15180724 |
T |
|
| Q |
101 |
ttgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaacattgatcaagtggtgattgataggaa |
200 |
Q |
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| T |
15180725 |
ttgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaacattgatcaagtggtgattgataggaa |
15180824 |
T |
|
| Q |
201 |
caatgtgattggtatgattttaagatcaacggttgggaagttaagtgtggatggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgttt |
300 |
Q |
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| T |
15180825 |
caatgtgattggtatgattttaagatcaacggttgggaagttaagtgtggatggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgttt |
15180924 |
T |
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| Q |
301 |
cctaataggattagtcattttcagtattcatttc |
334 |
Q |
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| T |
15180925 |
cctaataggattagtcattttcagtattcatttc |
15180958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 333
Target Start/End: Complemental strand, 38859142 - 38858936
Alignment:
| Q |
127 |
cctaataataatgttccaattgtaaaattagatgggggatttagtaacattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagat |
226 |
Q |
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| T |
38859142 |
cctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgatcaagtggtgattgatagaaacaatgtgaatggtatgggcttgagat |
38859043 |
T |
|
| Q |
227 |
caacggttgggaagttaagtgtggatggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgtttcctaataggattagtcattttcagta |
326 |
Q |
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| T |
38859042 |
caacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatttttcatcagttttggtatttcctaatcggattagtcatgttcaata |
38858943 |
T |
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| Q |
327 |
ttcattt |
333 |
Q |
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||||||| |
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| T |
38858942 |
ttcattt |
38858936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 38859266 - 38859209
Alignment:
| Q |
3 |
ggaagatcctgttcaagttcatgtcactaatggt-tttttcttaggggatgctaatatt |
60 |
Q |
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|||||| |||||||||||||||||||||||| || | |||||| ||||||||||||||| |
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| T |
38859266 |
ggaagaccctgttcaagttcatgtcactaattgtctatttctt-ggggatgctaatatt |
38859209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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