View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17808_low_5 (Length: 313)
Name: NF17808_low_5
Description: NF17808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17808_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 48672254 - 48672502
Alignment:
| Q |
1 |
gcttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggag |
100 |
Q |
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| T |
48672254 |
gcttctagaatgacgctgcaccgattcggcaacacttctagtagcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggag |
48672353 |
T |
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| Q |
101 |
accgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttg |
200 |
Q |
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| T |
48672354 |
accgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttg |
48672453 |
T |
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| Q |
201 |
gcttgactgcattgatgcataccctgcttctctcaattaaaaagcactt |
249 |
Q |
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| T |
48672454 |
gcttgactgcattgatgcataccctgcttctctcaattaaaaagcactt |
48672502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
108 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
156 |
Q |
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| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
108 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
159 |
Q |
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| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
107 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
156 |
Q |
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| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
107 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
156 |
Q |
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| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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