View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17809_low_1 (Length: 519)
Name: NF17809_low_1
Description: NF17809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17809_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 9402609 - 9402260
Alignment:
| Q |
14 |
gaagccctttgatgaggtttttgttgatcagcatgggaccaataatggctagactttaggatacggttaggccccatcagagaccaagccatactataat |
113 |
Q |
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| T |
9402609 |
gaagacctttgatgaggttgttgttgagcatcatgggaccaataatggctagactttaggatacggttaggccgcatcagagaccaagccatgctataat |
9402510 |
T |
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| Q |
114 |
ggacagtggtcaagtggaggagggaagtccgacttgtattagtttgaatgcaattatgtaaaaggctaagggaggggttgtatatcttcgtaggtgtgtt |
213 |
Q |
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| T |
9402509 |
ggacagtggtcaaatggaggagggaagtccgacttgtattagtctgaatgcaattatgtaaaaggcttagggaggggttgcatatcgccgtaggtgtgtt |
9402410 |
T |
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| Q |
214 |
agcgtgcatggtataatttgaatcgtatatttacaagcatcggacaaacatcaatatagttctatggtcttgacttcaattttaacaacgttcggattag |
313 |
Q |
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| T |
9402409 |
agggtgcatggtataatttgaaccgtatatttacaagcaccagacaaacatcaatatagttctatagtcttgacttcaattgtaacaacgttcggattag |
9402310 |
T |
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| Q |
314 |
agaacacaaaacatggttgagattctataattcgaataaagggtatttac |
363 |
Q |
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| T |
9402309 |
agaacacaaaacatggttgaaattctataattcgaataaagggtatttac |
9402260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 428 - 503
Target Start/End: Complemental strand, 9402196 - 9402121
Alignment:
| Q |
428 |
cagtaaagggattggaatcactagtttccaaacaacaatgttgctgggtgccatgaaacagcccacgtgtaccctt |
503 |
Q |
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| T |
9402196 |
cagtaaagggattggaatcactagtttccaaacaacaatgttgctgggtgccatgaaacagcccacgtgtaccctt |
9402121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 40975892 - 40975963
Alignment:
| Q |
130 |
gaggagggaagtccgacttgtattagtttgaatgcaattatgtaaaaggctaagggaggggttgtatatctt |
201 |
Q |
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| T |
40975892 |
gaggagggaagtccgacttggatttgtttgcatgcaattatacatgaggcttagggagggattgtttatctt |
40975963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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