View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17809_low_2 (Length: 332)
Name: NF17809_low_2
Description: NF17809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17809_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 32 - 322
Target Start/End: Complemental strand, 24419366 - 24419076
Alignment:
| Q |
32 |
taccccaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagct |
131 |
Q |
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| T |
24419366 |
taccctaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagctttggagataaatcttttcagattctgttatagaacaagct |
24419267 |
T |
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| Q |
132 |
atgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatattt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24419266 |
atgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatattt |
24419167 |
T |
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| Q |
232 |
cccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttctt |
322 |
Q |
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| T |
24419166 |
cccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttctt |
24419076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 32 - 318
Target Start/End: Original strand, 24415159 - 24415445
Alignment:
| Q |
32 |
taccccaacagtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagct |
131 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
24415159 |
taccccaacagtggctttgtgaacaatttccacaaagtgaaacttcctctattaccttcttttgagataaaccttttcagattctgttttagaacaagct |
24415258 |
T |
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| Q |
132 |
atgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatattt |
231 |
Q |
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| T |
24415259 |
atgtgatttcaaccactggatttgcaattttatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatattt |
24415358 |
T |
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| Q |
232 |
cccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctt |
318 |
Q |
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| T |
24415359 |
cccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgttctaaggatttttagctttgcttgctt |
24415445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 41 - 322
Target Start/End: Original strand, 24380134 - 24380415
Alignment:
| Q |
41 |
agtggctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagctatgtgattt |
140 |
Q |
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| T |
24380134 |
agtggctttgtgaatgatttccacaaagtgaaacttcctctattaccttcttttaagataaatcttttcaggttctgtttcagaacaagctatgtgattt |
24380233 |
T |
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| Q |
141 |
caaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatttcccagttga |
240 |
Q |
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| T |
24380234 |
caaccactggacttgcaattttctttccttacttcaatcaaattctaggagtactaggaggcataaatttctggccactggctatatatttcccagttga |
24380333 |
T |
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| Q |
241 |
aatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttctt |
322 |
Q |
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| T |
24380334 |
aatgtactttgtacagaagaaaattggagcttggactaaaaaatggattgttctcaggatatttagctttgcttgctttctt |
24380415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 24402357 - 24402633
Alignment:
| Q |
46 |
ctttgtgaacgatttccacaaagtgaaacttcctctattaccagatttggagataaatcttttcagattctgttatagaacaagctatgtgatttcaacc |
145 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||| | ||| |||||||| |||||||| || |||| | |||| || ||| ||||||||| |
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| T |
24402357 |
ctttgtgaatgatttccacatagtgaaacttcctctattacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaacc |
24402456 |
T |
|
| Q |
146 |
actggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatttcccagttgaaatgt |
245 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402457 |
gttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgt |
24402556 |
T |
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| Q |
246 |
actttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttctt |
322 |
Q |
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||||||||||||| ||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |
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| T |
24402557 |
actttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttctt |
24402633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 321
Target Start/End: Original strand, 42362982 - 42363172
Alignment:
| Q |
131 |
tatgtgatttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagctataaatttctggccattggctatatatt |
230 |
Q |
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||||||||||| || |||||||| ||||| | |||||||||||||| |||| ||||| | ||||||| || || ||||| ||| | ||||||| |
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| T |
42362982 |
tatgtgatttccacaactggacttgcaatcatgtttccttacttcaatgaagttttaggagtcctaggagcattaggcttttggcctttgaccatatatt |
42363081 |
T |
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| Q |
231 |
tcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttct |
321 |
Q |
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|||| || || ||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||| ||| |||| ||||||||||| |||| |||| |
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| T |
42363082 |
tcccggtagagatgtattttgtacagaataaaattgaagcttggtctacaaaatggattgttcttaggacttttagctttgtttgccttct |
42363172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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