View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17809_low_3 (Length: 280)
Name: NF17809_low_3
Description: NF17809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17809_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 45017035 - 45017293
Alignment:
| Q |
15 |
aaaatcaccatgacaaactacgatcccaccaaattcaccgtcaactcaaatatatatagacgtacaacttttcaatgatnnnnnnnn-caaaagatagta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45017035 |
aaaatcaccatgacaaactacgatcccaccaaattcactgtcaactcaaatatatatagacgtacaacttttcaatgataaaaaaaaacaaaagatagta |
45017134 |
T |
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| Q |
114 |
tagaagaatttacttgtaaatgggactgctgtcaagcataaaagatgagaaagaccaagaagaagaatcacgaataaactaaagaaagatcctgccattc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45017135 |
tagaagaatttacttgtaaatgggactgctgtcaagcataaaagatgagaaagaccaagaagaagaatcacgaataaactaaagaaagatcctgccattc |
45017234 |
T |
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| Q |
214 |
ctgcactgcaatggcccttctcagaaacaagctctaggatgtgttgcctcacctatgct |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
45017235 |
ctgcactgcaatggcccttctcagaaacaagctctaggatgtgttgccttacttatgct |
45017293 |
T |
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