View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17809_low_5 (Length: 203)

Name: NF17809_low_5
Description: NF17809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17809_low_5
NF17809_low_5
[»] chr6 (10 HSPs)
chr6 (1-203)||(31155283-31155488)
chr6 (35-203)||(4668098-4668265)
chr6 (35-203)||(4674945-4675112)
chr6 (35-203)||(4185708-4185875)
chr6 (34-203)||(4186433-4186592)
chr6 (36-132)||(1561371-1561466)
chr6 (1-75)||(19652225-19652302)
chr6 (1-132)||(28496429-28496562)
chr6 (1-132)||(29808840-29808973)
chr6 (52-132)||(9098468-9098549)
[»] chr1 (8 HSPs)
chr1 (1-186)||(21161746-21161933)
chr1 (1-128)||(20248309-20248438)
chr1 (138-203)||(21161937-21162002)
chr1 (1-132)||(33681037-33681173)
chr1 (1-83)||(22921875-22921960)
chr1 (1-70)||(52927989-52928061)
chr1 (38-130)||(22237697-22237791)
chr1 (1-75)||(21754075-21754152)
[»] scaffold0475 (1 HSPs)
scaffold0475 (35-203)||(9145-9312)
[»] chr8 (6 HSPs)
chr8 (1-185)||(6520398-6520586)
chr8 (1-201)||(38855138-38855342)
chr8 (1-132)||(21249414-21249548)
chr8 (1-132)||(21255252-21255386)
chr8 (1-83)||(21673734-21673819)
chr8 (1-75)||(26355712-26355789)
[»] chr7 (7 HSPs)
chr7 (9-200)||(16219604-16219800)
chr7 (1-185)||(811033-811222)
chr7 (1-185)||(47831837-47832026)
chr7 (1-200)||(67775-67978)
chr7 (1-128)||(44014208-44014336)
chr7 (36-132)||(15754845-15754940)
chr7 (1-83)||(18005676-18005761)
[»] chr4 (4 HSPs)
chr4 (1-132)||(39706244-39706379)
chr4 (1-75)||(12774037-12774114)
chr4 (36-132)||(16596716-16596811)
chr4 (52-132)||(12288164-12288245)
[»] chr3 (11 HSPs)
chr3 (1-158)||(14234517-14234679)
chr3 (1-132)||(12174217-12174350)
chr3 (1-132)||(13210285-13210418)
chr3 (35-140)||(15470991-15471098)
chr3 (1-132)||(16097358-16097494)
chr3 (1-75)||(32307707-32307784)
chr3 (1-75)||(49668090-49668167)
chr3 (35-75)||(9512987-9513027)
chr3 (35-75)||(9520962-9521002)
chr3 (35-75)||(16103847-16103887)
chr3 (9-75)||(1644688-1644756)
[»] scaffold0476 (1 HSPs)
scaffold0476 (1-185)||(12796-12985)
[»] chr5 (5 HSPs)
chr5 (12-132)||(19668939-19669061)
chr5 (1-200)||(21329384-21329588)
chr5 (1-132)||(22959490-22959623)
chr5 (1-132)||(21565572-21565708)
chr5 (95-151)||(26011971-26012027)
[»] scaffold0243 (1 HSPs)
scaffold0243 (35-185)||(6025-6177)
[»] scaffold0078 (1 HSPs)
scaffold0078 (35-200)||(10594-10761)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-132)||(22625-22761)
[»] scaffold0555 (1 HSPs)
scaffold0555 (35-132)||(10496-10595)
[»] scaffold0333 (2 HSPs)
scaffold0333 (1-140)||(6641-6785)
scaffold0333 (1-140)||(14021-14165)
[»] scaffold0010 (1 HSPs)
scaffold0010 (35-132)||(129972-130071)
[»] scaffold0138 (1 HSPs)
scaffold0138 (35-185)||(13006-13158)
[»] scaffold0556 (2 HSPs)
scaffold0556 (35-132)||(6879-6975)
scaffold0556 (95-201)||(8144-8250)
[»] scaffold1765 (1 HSPs)
scaffold1765 (1-145)||(1112-1261)
[»] scaffold0530 (1 HSPs)
scaffold0530 (1-132)||(989-1125)
[»] scaffold1984 (1 HSPs)
scaffold1984 (1-129)||(159-292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-81)||(15785-15868)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-83)||(45798-45883)
[»] scaffold0621 (2 HSPs)
scaffold0621 (1-83)||(6565-6650)
scaffold0621 (1-83)||(8496-8581)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-83)||(19294-19379)
[»] chr2 (3 HSPs)
chr2 (1-83)||(25175880-25175965)
chr2 (1-133)||(7679615-7679751)
chr2 (35-75)||(22134221-22134261)
[»] scaffold0100 (1 HSPs)
scaffold0100 (35-75)||(23897-23937)
[»] scaffold0023 (2 HSPs)
scaffold0023 (1-83)||(100404-100489)
scaffold0023 (35-83)||(40180-40228)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-75)||(160714-160791)
[»] scaffold0628 (1 HSPs)
scaffold0628 (1-83)||(2812-2897)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-82)||(38709-38793)
[»] scaffold0028 (1 HSPs)
scaffold0028 (92-200)||(62320-62429)
[»] scaffold0021 (2 HSPs)
scaffold0021 (52-140)||(136315-136404)
scaffold0021 (52-140)||(145023-145112)
[»] scaffold1257 (1 HSPs)
scaffold1257 (35-83)||(2224-2272)
[»] scaffold0278 (1 HSPs)
scaffold0278 (35-83)||(5710-5758)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31155488 - 31155283
Alignment:
Q  1 tcatgcaacttagttaaataacaaaaca---actaaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaac 97  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31155488 tcatgcaacttagttaaataacaaaacagcaactaaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttcatatcatcaac 31155389  T
Q  98 ataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaactta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31155388 ataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaaaaatttagactcactggaacatcaacagcaagctaggcaactta 31155289  T
Q  198 gttctt 203  Q
    ||||||    
T  31155288 gttctt 31155283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 4668265 - 4668098
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatca 134  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4668265 cagtatgcaactcatcatgatataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatca 4668166  T
Q  135 acaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
     ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  4668165 tcaacatcattggattaaacaa-ttagactcactggaacatcaacagcatgctaggcaacttagttctt 4668098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 4675112 - 4674945
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatca 134  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4675112 cagtatgcaactcatcatgatataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatca 4675013  T
Q  135 acaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
     ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  4675012 tcaacatcattggattaaacaa-ttagactcactggaacatcaacagcatgctaggcaacttagttctt 4674945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 4185875 - 4185708
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatca 134  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4185875 cagtatgcaactcatcatgatataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatca 4185776  T
Q  135 acaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
     ||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  4185775 tcaacatcattggattaaacaa-ttagactcactggaacatcaacaacatgctaggcaacttagttctt 4185708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 4186433 - 4186592
Alignment:
Q  34 acagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatc 133  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |            
T  4186433 acagtatgcaactcatcatgatataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgt-------- 4186524  T
Q  134 aacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
      ||||||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||    
T  4186525 -tcaacatcattggattaaac-agttagactcactggaacatcaacaacatgctaggcaacttagttctt 4186592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 1561371 - 1561466
Alignment:
Q  36 agtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||  |||| |||||||| |||||||||||||| ||| |||||  |||||||  ||||||| ||||| ||||| |||||| |||||||||||    
T  1561371 agtatgcaaaccatcatgatataataatatcgaatgcaaatcaacaactcaaatatca--aacataagtcatgtaatgtatatacaattatataacat 1561466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19652225 - 19652302
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||| ||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||||    
T  19652225 tcatgcagcttagttaaacaacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaat 19652302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28496562 - 28496429
Alignment:
Q  1 tcatgcaacttagttaaataacaa--aacaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaa-tatcatcaa 96  Q
    ||||||| ||||||||||||||||  | |||| ||  ||||||||||  |||| |||||||| ||||||||||| || ||| ||||| || |||||  ||    
T  28496562 tcatgcagcttagttaaataacaattagcaacataggcagtatgcaaaccatcatgatataataatatcgaatgtaaatcaacaactcaaatatca--aa 28496465  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  28496464 cataagtcatgtaatgtatatacaattatataacat 28496429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 29808973 - 29808840
Alignment:
Q  1 tcatgcaacttagttaaataacaa--aacaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaa-tatcatcaa 96  Q
    ||||||| ||||||||||||||||  | |||| ||  ||||||||||  |||| |||||||| ||||||||||| || ||| ||||| || |||||  ||    
T  29808973 tcatgcagcttagttaaataacaattagcaacataggcagtatgcaaaccatcatgatataataatatcgaatgtaaatcaacaactcaaatatca--aa 29808876  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  29808875 cataagtcatgtaatgtatatacaattatataacat 29808840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 9098549 - 9098468
Alignment:
Q  52 tgatataacaatatcgaatgcaattcatcaacttaatatcatc-aacataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||||||||||||| |||||| |||| |||||| | | |||| ||||||| ||||| ||||| |||| | |||||||||||    
T  9098549 tgatataacaatatcaaatgcatttcaacaacttcacaacatcaaacataattcatgtaatgtatatataattatataacat 9098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21161746 - 21161933
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caactaaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaaca 98  Q
    |||||||||||||||||| ||||||   |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21161746 tcatgcaacttagttaaacaacaaacagcaacaaaacagtatgcaaatcatcgtgatataacaatatcgaatgcaattcatcaacttcatatcatcaaca 21161845  T
Q  99 taaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagc 186  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  21161846 taaatcatacaatgtttatacacttatataacatcaacgacatcattggattaaacaaattaggctcactggaacatcaacagcaagc 21161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20248309 - 20248438
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt-aatatcatcaa 96  Q
    |||||||||||||||||| ||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||||  ||    
T  20248309 tcatgcaacttagttaaaaaacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaacttaaatatca--aa 20248406  T
Q  97 cataaatcatgcaatgtttatacatttatata 128  Q
    ||||| ||||| ||||| |||||| |||||||    
T  20248407 cataagtcatgtaatgtatatacaattatata 20248438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 21161937 - 21162002
Alignment:
Q  138 acatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||    
T  21161937 acatcattggattaaacaaattaggctcactggaacatcaacagcaagccaggcaactgagttctt 21162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33681037 - 33681173
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcat 93  Q
    |||||||||||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| || ||||| |    |||||||     
T  33681037 tcatgcaacttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcgtcaacatctcaaatatca- 33681135  T
Q  94 caacataaatcatgcaatgtttatacatttatataacat 132  Q
     ||||||| ||||| ||||| |||||| |||||||||||    
T  33681136 -aacataattcatgtaatgtatatacaattatataacat 33681173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22921960 - 22921875
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  22921960 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 22921875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52928061 - 52927989
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaat 70  Q
    ||||||| |||||||||||||||||  ||||| || ||||||||||| ||||| |||||||||||||||||||    
T  52928061 tcatgcagcttagttaaataacaaacaacaacatagacagtatgcaaatcatcatgatataacaatatcgaat 52927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 22237697 - 22237791
Alignment:
Q  38 tatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataac 130  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| |    |||||||  ||||||| ||||| ||||| |||||| |||||||||    
T  22237697 tatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaatatca--aacataattcatgtaatgtatatacaattatataac 22237791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21754075 - 21754152
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||| ||||||||    
T  21754075 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcaaatgcaat 21754152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 9145 - 9312
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaacataaatcatgcaatgtttatacatttatataacatca 134  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  9145 cagtatgcaactcatcatgatataacaatatcgaatgcaattcatcaacttcatatcatcaacataaatcatgcaatgtttatacatttgtttaacatca 9244  T
Q  135 acaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagttctt 203  Q
     ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9245 tcaacatcattggattaaacaa-ttagactcactggaacatcaacagcatgctaggcaacttagttctt 9312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6520398 - 6520586
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatcaa 96  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| |||||||| | || | ||||||    
T  6520398 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatcataaacatcaa 6520497  T
Q  97 cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
    ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||| |||||| || || |||| |||| ||||||||||    
T  6520498 cataattcatgtaatgtatatacaattatataacattagcaacaacattagattatacaattcaggcttactgaaacaacaacagcaag 6520586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38855342 - 38855138
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactta--atatcatca 95  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| |||| |   | || ||||    
T  38855342 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaacatctcaaat-atca 38855244  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaact 195  Q
    |||||| ||||  ||||| |||||| ||||||||||| | ||||| |||  ||||| |||||| || || |||| |||| |||||||||| ||  |||||    
T  38855243 acataattcatataatgtatatacaattatataacattagcaacaacattagattatacaattcaggcttactgaaacaacaacagcaagataaacaact 38855144  T
Q  196 tagttc 201  Q
    ||||||    
T  38855143 tagttc 38855138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21249414 - 21249548
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa---caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaa-tatcatca 95  Q
    ||||||| ||||||||||||| ||||   |||| ||| |||||||||| ||||| |||||||| ||||||||||| || ||| ||||| || |||||  |    
T  21249414 tcatgcagcttagttaaataaaaaaatagcaacataagcagtatgcaattcatcatgatataataatatcgaatgtaaatcaacaactcaattatca--a 21249511  T
Q  96 acataaatcatgcaatgtttatacatttatataacat 132  Q
    || ||| ||||| ||||| |||||| |||||||||||    
T  21249512 acttaagtcatgtaatgtatatacaattatataacat 21249548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21255252 - 21255386
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa---caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaa-tatcatca 95  Q
    ||||||| ||||||||||||| ||||   |||| ||| |||||||||| ||||| |||||||| ||||||||||| || ||| ||||| || |||||  |    
T  21255252 tcatgcagcttagttaaataaaaaaatagcaacataagcagtatgcaattcatcatgatataataatatcgaatgtaaatcaacaactcaattatca--a 21255349  T
Q  96 acataaatcatgcaatgtttatacatttatataacat 132  Q
    || ||| ||||| ||||| |||||| |||||||||||    
T  21255350 acttaagtcatgtaatgtatatacaattatataacat 21255386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21673734 - 21673819
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| | |||||||||||||||  ||||| ||  || ||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  21673734 tcatgcatcatagttaaataacaaacaacaacataggcattatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 21673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26355789 - 26355712
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||| ||||||  ||||| ||  |||||||||| |||||  |||||||||||||||||||||||    
T  26355789 tcatgcagcttagttaaacaacaaacaacaacataggcagtatgcaaatcatcacgatataacaatatcgaatgcaat 26355712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 16219800 - 16219604
Alignment:
Q  9 cttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-aacataaat 103  Q
    |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| |||||||| |  | | |||| ||||||| |    
T  16219800 cttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatcttaaacatcaaacataatt 16219701  T
Q  104 catgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagtt 200  Q
    |||| ||||| |||||| ||||||||||| ||||||| |||  ||||| | |||| || || |||| |||| |||||||||| ||  ||||||||||    
T  16219700 catgtaatgtatatacaattatataacattaacaacaacattagattatataattcaggcttactgaaacaacaacagcaagataaacaacttagtt 16219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 811222 - 811033
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| |||| ||| | || | |||| |    
T  811222 tcatgcagcttagttaaataacaaatagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcattaacatcataaacatcaa 811123  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
    |||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||| |||||| || || |||| |||  ||||||||||    
T  811122 acataattcatgtaatgtatatacaattatataacattagcaacaacattagattatacaattcaggcttactgaaactacaacagcaag 811033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 47831837 - 47832026
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| |||||||||||||||||  ||||| || ||||||||||  ||||| ||||||||||||||||||||||| |||||||| | || | |||| |    
T  47831837 tcatgcagcttagttaaataacaaacaacaacatagacagtatgcatatcatcatgatataacaatatcgaatgcaagtcatcaacatcataaacatcaa 47831936  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
    |||||| ||||  ||||| |||||| ||||||||||| | | ||| |||  ||||| |||||| || || |||| |||| ||||| ||||    
T  47831937 acataattcatataatgtatatacaattatataacattagcgacaacattagattatacaattcaggcttactgaaacaacaacaacaag 47832026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 67775 - 67978
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaac 97  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| |||| |   |  ||||||    
T  67775 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaacatctcaatatcaac 67874  T
Q  98 ataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatta-aacaatttagactcactggaacatcaacagcaagctaggcaactt 196  Q
    |||| ||||  ||||| |||||| ||||||||||| ||||||| |||  ||| | |  |||| || ||||||| |||| |||||||||| ||  ||||||    
T  67875 ataattcatataatgtatatacaattatataacattaacaacaacattagatcatattaattcaggctcactgaaacaacaacagcaagataaacaactt 67974  T
Q  197 agtt 200  Q
    ||||    
T  67975 agtt 67978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44014208 - 44014336
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatatcatcaac 97  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| || || || || ||||||    
T  44014208 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacatctcaa-at-atcaac 44014305  T
Q  98 ataaatcatgcaatgtttatacatttatata 128  Q
    |||| ||||  ||||| |||||| |||||||    
T  44014306 ataattcatataatgtatatacagttatata 44014336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 15754940 - 15754845
Alignment:
Q  36 agtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||  |||| |||||||| |||||||||||||| ||| |||||  |||||||  ||||||| ||||| ||||| |||||| |||||||||||    
T  15754940 agtatgcaaaccatcatgatataataatatcgaatgcaaatcaacaactcaaatatca--aacataagtcatgtaatgtatatacaattatataacat 15754845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18005676 - 18005761
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   |||| ||| ||||||| || ||||| ||||||||||||||||||||||| ||| ||||    
T  18005676 tcatgcagcttagttaaataacaaacagcaacataagcagtatggaaatcatcatgatataacaatatcgaatgcaaatcaacaac 18005761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39706379 - 39706244
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatcaa 96  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| |||| ||| | || | ||||||    
T  39706379 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatgaacatcataaacatcaa 39706280  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  39706279 cataattcatgtaatgtatatacaattatataacat 39706244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12774037 - 12774114
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||| ||||    
T  12774037 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatacaat 12774114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 16596716 - 16596811
Alignment:
Q  36 agtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaa-tatcatcaacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||  |||| |||||||| ||||||||||| || ||||||||| || |||||  ||| ||| ||||| ||||| |||||| |||||||||||    
T  16596716 agtatgcaaaccatcatgatataataatatcgaatgtaaatcatcaactcaattatca--aacttaagtcatgtaatgtatatacaattatataacat 16596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 12288245 - 12288164
Alignment:
Q  52 tgatataacaatatcgaatgcaattcatcaacttaatatcatc-aacataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||||||||||||| ||||||||||| |||| | | | |||| ||||||| ||||| ||||| ||||||  ||||||||||    
T  12288245 tgatataacaatatcaaatgcaattcaacaacatcacaacatcaaacataattcatgtaatgtatatacaactatataacat 12288164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14234517 - 14234679
Alignment:
Q  1 tcatgcaacttagttaaataacaa--aacaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| ||||||||||||||||  | |||| ||  |||||||||| ||||| ||||||||||||||||||||||| |||||||| | || | |||| |    
T  14234517 tcatgcagcttagttaaataacaagcagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatcataaacatcaa 14234616  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatt 158  Q
    |||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||||||||||    
T  14234617 acataattcatgtaatgtatatacaattatataacattagcaacaacattagattaaacaatt 14234679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 12174350 - 12174217
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaa 96  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| |||||||||||||||||||||||  || |||||  |||||||  ||    
T  12174350 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaaacaacaactcaaatatca--aa 12174253  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  12174252 cataagtcatgtaatgtatatacaattatataacat 12174217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13210418 - 13210285
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt-aatatcatcaa 96  Q
    ||||||| |||||||||||||||||   |||| ||  ||||||||||  |||| |||||||| |||||||||||||| ||| |||||| |||||||  ||    
T  13210418 tcatgcagcttagttaaataacaaatagcaacataggcagtatgcaaaccatcatgatataataatatcgaatgcaaatcaacaacttaaatatca--aa 13210321  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  13210320 cataagtcatgtaatgtatatacaattatataacat 13210285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 15470991 - 15471098
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataac 130  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||| |    || ||||  ||||||| ||||| ||||| |||||| |||||||||    
T  15470991 cagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaacatca--aacataattcatgtaatgtatatacaattatataac 15471088  T
Q  131 atcaacaaca 140  Q
    || |||||||    
T  15471089 attaacaaca 15471098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16097358 - 16097494
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcat 93  Q
    ||||||| |||||||||||||||||  ||||| ||  || ||||||| ||||| | ||||||||||||||||||||| |||||||| |    |||||||     
T  16097358 tcatgcagcttagttaaataacaaacaacaacataggcaatatgcaaatcatcatcatataacaatatcgaatgcaagtcatcaacatctcaaatatca- 16097456  T
Q  94 caacataaatcatgcaatgtttatacatttatataacat 132  Q
     ||||||| ||||| ||||| |||||| |||||||||||    
T  16097457 -aacataattcatgtaatgtatatacaattatataacat 16097494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32307707 - 32307784
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||||    
T  32307707 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaat 32307784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49668167 - 49668090
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||||    
T  49668167 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaat 49668090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 9512987 - 9513027
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  9512987 cagtatgcaaatcatcatgatataacaatatcgaatgcaat 9513027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 9520962 - 9521002
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  9520962 cagtatgcaaatcatcatgatataacaatatcgaatgcaat 9521002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 16103847 - 16103887
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  16103847 cagtatgcaaatcatcatgatataacaatatcgaatgcaat 16103887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 1644756 - 1644688
Alignment:
Q  9 cttagttaaataacaa-aacaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||||||||| |||||| ||  |||||||||| ||||| | ||||||||||||||||| ||||    
T  1644756 cttagttaaataacaacaacaacataggcagtatgcaaatcatcattatataacaatatcgaatacaat 1644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 12796 - 12985
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| ||||| |||||||||||  ||||| ||  || ||||||| ||||| ||||||||||||||||||||||| |||||||| | || | |||| |    
T  12796 tcatgcagcttagctaaataacaaacaacaacataggcaatatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatcataaacatcaa 12895  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
    |||||| ||||| ||||| |||||| ||||||||||| || |||| |||  ||| | | |||| || || ||||||||| ||||||||||    
T  12896 acataattcatgtaatgtatatacaattatataacattaataacaacattagatcatataattcaggcttactggaacaacaacagcaag 12985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 19668939 - 19669061
Alignment:
Q  12 agttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaacataaatcatg 107  Q
    ||||||||||||||  ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||  |||||||  ||||||| || ||    
T  19668939 agttaaataacaaacaacaacatagacagtatgcaaatcatcgtgatataacaatatcgaatgcaaatcaacaactcaaatatca--aacataagtcctg 19669036  T
Q  108 caatgtttatacatttatataacat 132  Q
     ||||| |||||| |||||||||||    
T  19669037 taatgtatatacaattatataacat 19669061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21329588 - 21329384
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaatat-catcaa 96  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| | ||||||||||||||||| ||| |||||||| | |||  ||||||    
T  21329588 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcataatataacaatatcgaattcaagtcatcaacatcataaacatcaa 21329489  T
Q  97 -cataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaact 195  Q
     ||||| ||||| ||||| |||||| ||||||||||| | ||||| |||  ||||| |||||| || || |||| |||| ||||| |||| ||  |||||    
T  21329488 acataattcatgtaatgtatatacaattatataacattagcaacaacattagattatacaattcaggcttactgaaacaacaacaacaagataaacaact 21329389  T
Q  196 tagtt 200  Q
    |||||    
T  21329388 tagtt 21329384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22959623 - 22959490
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaa 96  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| |||||||||||||| |||||||| ||| |||||  |||||||  ||    
T  22959623 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatattgaatgcaaatcaacaactcaaatatca--aa 22959526  T
Q  97 cataaatcatgcaatgtttatacatttatataacat 132  Q
    ||||| ||||| ||||| |||||| |||||||||||    
T  22959525 cataagtcatgtaatgtatatacaattatataacat 22959490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21565572 - 21565708
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcat 93  Q
    ||||||| |||||||||||||||||   |||| ||  |||||| ||| ||||| ||||||||||||||||||||||| |||||||| |    |||||||     
T  21565572 tcatgcagcttagttaaataacaaatagcaacataggcagtatccaaatcatcatgatataacaatatcgaatgcaagtcatcaacatttcaaatatca- 21565670  T
Q  94 caacataaatcatgcaatgtttatacatttatataacat 132  Q
     ||||||| ||||| ||||| |||||| |||||||||||    
T  21565671 -aacataattcatgtaatgtatatacaattatataacat 21565708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 26012027 - 26011971
Alignment:
Q  95 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatta 151  Q
    ||||||| ||||| ||||| |||||| ||||||||||||||||||| |||| |||||    
T  26012027 aacataattcatgtaatgtatatacaattatataacatcaacaacaacatcagatta 26011971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 6177 - 6025
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-aacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||| ||| | || | |||| ||||||| ||||| ||||| |||||| |||||||||||    
T  6177 cagtatgcaaatcatcatgatataacaatatcgaatgcaagtcattaacatcataaacatcaaacataattcatgtaatgtatatacaattatataacat 6078  T
Q  133 caacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
     | ||||| |||  ||||| |||||| || || |||| ||||  |||||||||    
T  6077 tagcaacaacattagattatacaattcaggcttactgaaacaataacagcaag 6025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 10594 - 10761
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac-ttaatatcatc-aacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||| |    | |||| ||||||| ||||| ||||| |||||| |||||| ||||    
T  10594 cagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaacatcgaacataattcatgtaatgtatatacaattatatgacat 10693  T
Q  133 caacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaacttagtt 200  Q
     ||||||| |||  ||||| | |||| || || |||| |||| |||||||||| ||  ||||||||||    
T  10694 taacaacaacattagattatataattcaggcttactgaaacaacaacagcaagataaacaacttagtt 10761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22761 - 22625
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcat 93  Q
    ||||||| |||||||||||||||||   | || || ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |    |||||||     
T  22761 tcatgcagcttagttaaataacaaacagcgacatagacagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaatatca- 22663  T
Q  94 caacataaatcatgcaatgtttatacatttatataacat 132  Q
     ||||||| ||||| ||||| |||||| |||||||||||    
T  22662 -aacataattcatgtaatgtatatacaattatataacat 22625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 10595 - 10496
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataac 130  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||| |    |||||||  ||||||| ||||| ||||| |||||| |||||||||    
T  10595 cagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaatatca--aacataattcatgtaatgtatatacaattatataac 10498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6641 - 6785
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac-ttaatatcatc-a 95  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||  ||||||||||||||||||||||| | |||| | |||  | |||| |    
T  6641 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatgatgatataacaatatcgaatgcaagttatcatcattataaacatcaa 6740  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaaca 140  Q
    |||||| ||||| ||||| |||||| ||||||||||| |||||||    
T  6741 acataattcatgtaatgtatatacaattatataacattaacaaca 6785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 14021 - 14165
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac-ttaatatcatc-a 95  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||  ||||||||||||||||||||||| | |||| | |||  | |||| |    
T  14021 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatgatgatataacaatatcgaatgcaagttatcatcattataaacatcaa 14120  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaaca 140  Q
    |||||| ||||| ||||| |||||| ||||||||||| |||||||    
T  14121 acataattcatgtaatgtatatacaattatataacattaacaaca 14165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 129972 - 130071
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcatcaacataaatcatgcaatgtttatacatttatataac 130  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||| |    |||||||  ||||||| ||||| ||||| |||||| |||||||||    
T  129972 cagtatgcaaatcatcatgatataacaatatcgaatgcaagtcatcaacatctcaaatatca--aacataattcatgtaatgtatatacaattatataac 130069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 13006 - 13158
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-aacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||| ||| | ||||||||||||||||||||||| |||||||| | || | |||| ||||||| || || ||||| |||||| |||||||||||    
T  13006 cagtatgcaaatcagcatgatataacaatatcgaatgcaagtcatcaacatcataaacatcaaacataattcgtgtaatgtatatacaattatataacat 13105  T
Q  133 caacaacatcatcggattaaacaatttagactcactggaacatcaacagcaag 185  Q
     | ||||| |||  |||||  ||||| || || |||| |||| ||||||||||    
T  13106 tagcaacaacattagattatccaattcaggcttactgaaacaacaacagcaag 13158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 6879 - 6975
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaact-taatatcatcaacataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||||||| ||||| |||||||||||||| |||||||| ||| |||||  |||||||  ||||||| ||||| ||||| |||||| |||||||||||    
T  6879 cagtatgcaaatcatcatgatataacaatattgaatgcaaatcaacaactcaaatatca--aacataagtcatgtaatgtatatacaattatataacat 6975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 8144 - 8250
Alignment:
Q  95 aacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggattaaacaatttagactcactggaacatcaacagcaagctaggcaac 194  Q
    ||||||| ||||| ||||| |||||| ||||||||||| ||||||| |||  ||||| | |||| || || |||| |||| |||||||| | ||  ||||    
T  8144 aacataattcatgtaatgtatatacaattatataacattaacaacaacattagattatataattcaggcttactgaaacaacaacagcaggataaacaac 8243  T
Q  195 ttagttc 201  Q
    |||||||    
T  8244 ttagttc 8250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1765 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1765
Description:

Target: scaffold1765; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1112 - 1261
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac-ttaatatcatc-a 95  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||| ||  |||||||| ||   | |||| |    
T  1112 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatacaggtcatcaacatttcaaacatcaa 1211  T
Q  96 acataaatcatgcaatgtttatacatttatataacatcaacaacatcatc 145  Q
    |||||| ||||| ||||| ||||||  |||||||||| ||||||| ||||    
T  1212 acataattcatggaatgtatatacaactatataacattaacaacaacatc 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 1125 - 989
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| |||||||||||||||||  ||||| ||   ||||||||  ||||| ||||||||||| ||||||||||| |||||||| | || | |||| |    
T  1125 tcatgcagcttagttaaataacaaacaacaacataggtagtatgcagatcatcatgatataacaacatcgaatgcaagtcatcaacatcataaacatcaa 1026  T
Q  96 acataaatcatgcaatgtttatacatttatataacat 132  Q
    |||||| ||||| ||||| |||||| |||||||||||    
T  1025 acataattcatgtaatgtatatacaattatataacat 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1984 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1984
Description:

Target: scaffold1984; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 159 - 292
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaactt----aatatcat 93  Q
    ||||||| |||||||||| ||||||  ||||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| |||| |    |||||||     
T  159 tcatgcagcttagttaaacaacaaacaacaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaacatctcaaatatca- 257  T
Q  94 caacataaatcatgcaatgtttatacatttatataa 129  Q
     ||||||| ||||| ||||| |||||| ||||||||    
T  258 -aacataattcatgtaatgtatatacaattatataa 292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15868 - 15785
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatca 81  Q
    ||||||| |||||||||||||||||  ||||| ||  |||||||||| ||||  ||||||||||||||||||||||| ||||||    
T  15868 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaatcatgatgatataacaatatcgaatgcaagtcatca 15785  T

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Target: scaffold0125 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45883 - 45798
Alignment:
Q  1 tcatgcaacttagttaaataacaaa---acaactaaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   | || ||  |||||||||| ||||| |||||||||||||||||||| || ||||||||    
T  45883 tcatgcagcttagttaaataacaaacagaaaaataggcagtatgcaaatcatcatgatataacaatatcgaatgtaagtcatcaac 45798  T

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Target: scaffold0621 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0621
Description:

Target: scaffold0621; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6565 - 6650
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  6565 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 6650  T

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Target: scaffold0621; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8496 - 8581
Alignment:
Q  1 tcatgcaacttagttaaataacaaa--acaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||  ||||| ||  ||||||||||  || | ||||||||||||||| ||||||| ||||||||    
T  8496 tcatgcagcttagttaaataacaaacaacaacataggcagtatgcaaaacagcatgatataacaatatcaaatgcaagtcatcaac 8581  T

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Target: scaffold0102 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19294 - 19379
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  19294 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 19379  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 25175880 - 25175965
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  25175880 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 25175965  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 7679615 - 7679751
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaacttaat-atcatc-a 95  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| ||||||||||||||| |||| || |||||||| | || | |||| |    
T  7679615 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataacaatatc-aatgtaagtcatcaacatcataaacatcaa 7679713  T
Q  96 acataaatcatgcaatgtttatacatttatataacatc 133  Q
    |||||| ||||| ||||| |||| | ||||||||||||    
T  7679714 acataattcatgtaatgtatatataattatataacatc 7679751  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 22134261 - 22134221
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  22134261 cagtatgcaaatcatcataatataacaatatcgaatgcaat 22134221  T

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Target: scaffold0100 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 23937 - 23897
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  23937 cagtatgcaaatcatcatgatataacaatatcgaatgcaat 23897  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 100404 - 100489
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| |||||||||||||||||   |||| ||  |||||||||| ||||| |||||||| |||||||||||||| ||| ||||    
T  100404 tcatgcagcttagttaaataacaaacagcaacataggcagtatgcaaatcatcatgatataataatatcgaatgcaaatcaacaac 100489  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 40228 - 40180
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||| |||| ||||| ||||||||||||||||||||||| ||| ||||    
T  40228 cagtaggcaaatcatcatgatataacaatatcgaatgcaaatcaacaac 40180  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 160714 - 160791
Alignment:
Q  1 tcatgcaacttagttaaataacaa--aacaac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaat 75  Q
    ||||||| ||||||||||||||||  | |||| ||  |||||||||| ||||| ||||||||||||||| ||||||||    
T  160714 tcatgcagcttagttaaataacaatcagcaacataggcagtatgcaaatcatcatgatataacaatatcaaatgcaat 160791  T

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Target: scaffold0628 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2897 - 2812
Alignment:
Q  1 tcatgcaacttagttaaataacaaaacaactaaa----cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| ||||||||||||||||| || ||| |    |||||||||| ||||| ||||||||||||||| ||||||| ||| ||||    
T  2897 tcatgcagcttagttaaataacaaa-cagctacataggcagtatgcaaatcatcatgatataacaatatcaaatgcaaatcaacaac 2812  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38793 - 38709
Alignment:
Q  1 tcatgcaacttagttaaataacaaaa--caac-taaacagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaa 82  Q
    ||||||| |||||||||||||||||   |||| || |||||||||||  || | ||||||||||||||| ||||||| |||||||    
T  38793 tcatgcaccttagttaaataacaaacagcaacatagacagtatgcaaaacaacatgatataacaatatcaaatgcaagtcatcaa 38709  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 62320 - 62429
Alignment:
Q  92 atcaacataaatcatgcaatgtttatacatttatataacatcaacaacatcatcggatta-aacaatttagactcactggaacatcaacagcaagctagg 190  Q
    |||||||||| ||||  ||||| |||||| ||||||||||| |||||||||||  | | | ||||||| || || |||| |||| |||||||||| ||      
T  62320 atcaacataattcatataatgtatatacaattatataacattaacaacatcattagttcataacaattcaggcttactgaaacaacaacagcaagataaa 62419  T
Q  191 caacttagtt 200  Q
    ||||||||||    
T  62420 caacttagtt 62429  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 136404 - 136315
Alignment:
Q  52 tgatataacaatatcgaatgcaattcatcaacttaatatcatc-aacataaatcatgcaatgtttatacatttatataacatcaacaaca 140  Q
    ||||||||||||||| ||||||| ||| |||| | | ||||||  |||||| ||||| ||||| ||||||  |||||||||| |||||||    
T  136404 tgatataacaatatcaaatgcaaatcaacaacatcacatcatcgtacataattcatgtaatgtatatacaactatataacattaacaaca 136315  T

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Target: scaffold0021; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 145112 - 145023
Alignment:
Q  52 tgatataacaatatcgaatgcaattcatcaacttaatatcatc-aacataaatcatgcaatgtttatacatttatataacatcaacaaca 140  Q
    ||||||||||||||| ||||||| ||| |||| | | ||||||  |||||| ||||| ||||| ||||||  |||||||||| |||||||    
T  145112 tgatataacaatatcaaatgcaaatcaacaacatcacatcatcgtacataattcatgtaatgtatatacaactatataacattaacaaca 145023  T

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Target: scaffold1257 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1257
Description:

Target: scaffold1257; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 2272 - 2224
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||| ||||    
T  2272 cagtatgcaaatcatcatgatataacaatatcaaatgcaaatcaacaac 2224  T

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Target: scaffold0278 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 5710 - 5758
Alignment:
Q  35 cagtatgcaagtcatcgtgatataacaatatcgaatgcaattcatcaac 83  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||| ||||    
T  5710 cagtatgaaaatcatcatgatataacaatatcgaatgcaaatcaacaac 5758  T

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