View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_1 (Length: 616)
Name: NF1780_high_1
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 56 - 606
Target Start/End: Complemental strand, 43788602 - 43788052
Alignment:
| Q |
56 |
ttaagttaattaagacaattgtttttctcaaccaaaacaacctacttgttggatattaaataagagaagaaaacataaaagagaaaacaaccacattagc |
155 |
Q |
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| T |
43788602 |
ttaatttaattaagacaattgtttttctcaaccaaaacaacctacttgttggatattaaataagagaagaaaacatagaagagaaaacaaccacattagc |
43788503 |
T |
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| Q |
156 |
tttagtcaaatctagtgttgaatattgaagtcaaccatgtgaggtttggtgtataatgtattacacattcaaatatattgcatcaccttaattaatcaag |
255 |
Q |
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| T |
43788502 |
tttagtcaaatctagtgttgaatattgaagtcaaccatgtgaggtttggtgtataatgtattacacattcaaatatattgcatcaccctaattaatcaag |
43788403 |
T |
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| Q |
256 |
ttcaatatcaaatagtttattgagattcttgatattcatatagaatccaaaatgcatgaagacaaagtgcctcatagtatatcttatctgctcatgacat |
355 |
Q |
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| T |
43788402 |
ttcaatatcaaatagtttattgagattcttgatattcatatagaatccaaaatgcatgaagacaaagtgcctcatagtatatcttatctgctcatgacat |
43788303 |
T |
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| Q |
356 |
agctttcagtagtagctttatacccttattagttccccatgattcaagcataagcaacctacatgggacaatgtgtcaatgtccacttatgacactatac |
455 |
Q |
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| T |
43788302 |
agctttcagtagtagctttatacccttattagttccccatgattcaagcataagcaacctacatgggacaatgtgtcaatgtccacttatgacactatac |
43788203 |
T |
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| Q |
456 |
aaactgccctttggggtgtacattgcactaatcagcgtggctttgtttgtcctcatttcagtgaagacaacttgctccggtgggtgatccattccaatat |
555 |
Q |
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| T |
43788202 |
aaactgccctttggggtgtacattgcactaatcagcgtggctttgtttgtcctcatttcagtgaacacaacttgctccggtgggggatccattccaatat |
43788103 |
T |
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| Q |
556 |
gactaaagtcattatggtgttcaaccatgtgggattatgttcgaccctatg |
606 |
Q |
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| T |
43788102 |
gactaaagtcattatggtgttcaaccatgtgggattatgttcgaccctatg |
43788052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 43788624 - 43788588
Alignment:
| Q |
16 |
atatgtattttctactatcaaattaatttaattaaga |
52 |
Q |
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| T |
43788624 |
atatgtattttctactatcaaattaatttaattaaga |
43788588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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