View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1780_high_12 (Length: 373)
Name: NF1780_high_12
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 30769147 - 30769486
Alignment:
| Q |
16 |
attttttctctatttccacttgtttagatccttgaaaacttacattggaatactaagagaaaagctggattgtactaaatacagcaaaaaacaagttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30769147 |
attttttctctatttccacttgtttagatccttgaaaacttacattggaatactaagagaaaagctggattgtactaaatacagcaaaaaacaagttgta |
30769246 |
T |
|
| Q |
116 |
acaaactgtgagagattctttatttgcatataaggtatctcattttcatttcatttcaaaggtaaagtcacatagaaagaggaaaaaagaataagtcaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30769247 |
acaaactgtgagagattctttatttgcatataaggtatctcattttcatttcatttcaaaggtaaagtcacatagaaagaggaaaaaagaataagtcaca |
30769346 |
T |
|
| Q |
216 |
gttgaatctcaacttataggaatatcaacttctatttactctgttcctcccctgttttcactctgctatttcccttgtactaactctgtttctcccctgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30769347 |
gttgaatctcaacttataggaatatcaacttctatttactctgttcctcccctgttttcactctgctatttcccttgtactaactctgtttctcccctgt |
30769446 |
T |
|
| Q |
316 |
tttcactctgcaccaaactaagtagagtgatcagagactc |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30769447 |
tttcactctgcaccaaactaagcagagtgatcagagactc |
30769486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University