View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_high_13 (Length: 372)

Name: NF1780_high_13
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_high_13
NF1780_high_13
[»] chr7 (8 HSPs)
chr7 (156-358)||(5532905-5533103)
chr7 (208-298)||(47841576-47841666)
chr7 (190-302)||(38223831-38223943)
chr7 (190-282)||(9486981-9487072)
chr7 (231-287)||(44484196-44484252)
chr7 (235-304)||(33987590-33987659)
chr7 (236-302)||(17604025-17604091)
chr7 (158-211)||(33174189-33174241)
[»] chr4 (10 HSPs)
chr4 (156-304)||(51997032-51997180)
chr4 (159-305)||(51676659-51676805)
chr4 (178-311)||(5834013-5834147)
chr4 (158-273)||(40946355-40946470)
chr4 (236-307)||(45047315-45047386)
chr4 (169-230)||(55970063-55970123)
chr4 (236-304)||(1586306-1586374)
chr4 (190-282)||(8824842-8824933)
chr4 (209-302)||(39055021-39055114)
chr4 (221-282)||(51654731-51654791)
[»] chr8 (6 HSPs)
chr8 (156-304)||(30905661-30905809)
chr8 (157-202)||(44104082-44104127)
chr8 (237-306)||(38937644-38937713)
chr8 (158-230)||(24845670-24845742)
chr8 (227-300)||(13629194-13629267)
chr8 (227-300)||(13729606-13729679)
[»] chr2 (8 HSPs)
chr2 (163-305)||(4062724-4062864)
chr2 (156-304)||(7772938-7773086)
chr2 (158-231)||(43302175-43302247)
chr2 (225-302)||(37348029-37348105)
chr2 (253-297)||(448677-448721)
chr2 (190-253)||(15268276-15268339)
chr2 (190-236)||(16118069-16118115)
chr2 (166-295)||(11512062-11512191)
[»] chr5 (5 HSPs)
chr5 (157-298)||(5495759-5495896)
chr5 (156-302)||(13906105-13906251)
chr5 (231-304)||(13417466-13417539)
chr5 (236-302)||(30471601-30471667)
chr5 (225-304)||(41521041-41521119)
[»] chr6 (2 HSPs)
chr6 (158-230)||(378840-378911)
chr6 (237-304)||(6794113-6794180)
[»] chr3 (4 HSPs)
chr3 (158-302)||(17378686-17378829)
chr3 (156-219)||(52120127-52120189)
chr3 (230-304)||(14477078-14477152)
chr3 (158-230)||(40485220-40485292)
[»] chr1 (4 HSPs)
chr1 (158-292)||(42400864-42400998)
chr1 (163-230)||(15457220-15457286)
chr1 (158-221)||(33780677-33780740)
chr1 (233-285)||(36297857-36297909)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 156 - 358
Target Start/End: Original strand, 5532905 - 5533103
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatt 255  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||    ||||||||||||| |||||| || |||||||||||| ||| ||||    
T  5532905 gcaaaagtaatgtggagtccacttaagcattgatgtcttaagtgagaccct----cttagaagacctccaaaaaaattatccacaatggaggtacctatt 5533000  T
Q  256 agataccggatcttaaataattaagaccctaccattgtggatggtctaatatctttcaatcaaaatagtttttgacgcatctattacgtcaaaagttctt 355  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  5533001 agataccggatcttaaataattaagactctaccattgtagatggtctaatatctttcaatcaaaatagcttttgacgcatctattaagtcaaaagttctt 5533100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 47841576 - 47841666
Alignment:
Q  208 ggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatg 298  Q
    ||||||| |||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  47841576 ggtcttataagacccctaaaaaatttctccacaatggggctacctattagataccggatcttaaatagttaagaccgtaccattgtggatg 47841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 38223943 - 38223831
Alignment:
Q  190 gtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctacca 289  Q
    |||||||||||||  || ||||||| |||||| | ||||| ||| ||||||||| |  |||  ||||| |||| ||||||||||| ||||||||| ||||    
T  38223943 gtcttaagtgagactctgggtcttataagacccccaaaaattttgtccacaatgaaagtaccaattaggtaccagatcttaaatagttaagaccccacca 38223844  T
Q  290 ttgtggatggtct 302  Q
    |||||||| ||||    
T  38223843 ttgtggatcgtct 38223831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 9486981 - 9487072
Alignment:
Q  190 gtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagac 282  Q
    ||||||||||||| ||| |||||||||||||||| ||||  | | ||| |||||||| ||| ||||||||||||| |||||||| || |||||    
T  9486981 gtcttaagtgagaccctcggtcttagaagacctccaaaatttgtttccccaatggaggtacctattagataccgg-tcttaaatgatgaagac 9487072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 44484196 - 44484252
Alignment:
Q  231 tttctccacaatggagatacttattagataccggatcttaaataattaagaccctac 287  Q
    |||||||||| ||||||||| |||||||||||||||||||||| || ||||| ||||    
T  44484196 tttctccacattggagatacctattagataccggatcttaaatgataaagactctac 44484252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 33987659 - 33987590
Alignment:
Q  235 tccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    |||||||||||| ||| ||||||||||| ||||||||||  |||||||  | |||||||||||| |||||    
T  33987659 tccacaatggaggtacgtattagataccagatcttaaatgtttaagactattccattgtggatgctctaa 33987590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 17604025 - 17604091
Alignment:
Q  236 ccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
    ||||||||||| ||| ||||||  |||| |||||||||  ||||||||  |||||||||||||||||    
T  17604025 ccacaatggaggtacctattaggcaccgaatcttaaatggttaagacctcaccattgtggatggtct 17604091  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 33174189 - 33174241
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtc 211  Q
    ||||||| ||||||| ||||||||| || |||||||||||||||| ||||||||    
T  33174189 aaaagtattgtggggcccacttaagaat-gatgtcttaagtgagaccctaggtc 33174241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 51997180 - 51997032
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatt 255  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| | | |||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  51997180 gcaaaagtaatgtggggcccacttaagcattgaggtcttaagtgagaccttgggtcttagaagacccccaaaaaatttctccacaatagggatacctatt 51997081  T
Q  256 agataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    || ||  |||||||||||| |||||||||||||||||||||||||||||    
T  51997080 aggtattggatcttaaatagttaagaccctaccattgtggatggtctaa 51997032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 305
Target Start/End: Complemental strand, 51676805 - 51676659
Alignment:
Q  159 aaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattaga 258  Q
    |||||||||||||| ||||||||||||||| ||||||| | |||  || ||||||||||||||   |||||||||||||||||| | | ||| |||||      
T  51676805 aaagtaatgtggggcccacttaagcattgaggtcttaactaagactctgggtcttagaagacccgcaaaaaatttctccacaataggggtacctattaag 51676706  T
Q  259 taccggatcttaaataattaagaccctaccattgtggatggtctaat 305  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||    
T  51676705 taccggatcttaaatagttaaaaccctactattgtggatggtctaat 51676659  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 5834147 - 5834013
Alignment:
Q  178 ttaagcattgatgtcttaagtgagatc-ctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataat 276  Q
    ||||||||||| ||||||||||||  |  | |||||| ||||| | |||||||||||||||||||||||| ||| |||||| |||||| ||||||||| |    
T  5834147 ttaagcattgaagtcttaagtgagtgctttgggtcttggaagatccctaaaaaatttctccacaatggaggtacctattaggtaccgggtcttaaatagt 5834048  T
Q  277 taagaccctaccattgtggatggtctaatatcttt 311  Q
    ||| |||||||||||||||||||||||||| ||||    
T  5834047 taaaaccctaccattgtggatggtctaataacttt 5834013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 40946355 - 40946470
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagac-ctctaaa--aaatttctccacaatggagatacttat 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||  ||| ||||| || ||  |||  ||||||   |||| ||||||||| |||    
T  40946355 aaaagtaatgtggggtccacttaagcattgaggtcttaagtgagaccctgagtcctagaaaactctggaaaataaattt---cacattggagatacctat 40946451  T
Q  255 tagataccggatcttaaat 273  Q
    ||| |||||||||||||||    
T  40946452 taggtaccggatcttaaat 40946470  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 45047315 - 45047386
Alignment:
Q  236 ccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaatat 307  Q
    ||||||||||  |||||| ||| |||||||||||||||  ||||||||  ||||||||||||||||||||||    
T  45047315 ccacaatggatgtacttaataggtaccggatcttaaatggttaagacctcaccattgtggatggtctaatat 45047386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 55970123 - 55970063
Alignment:
Q  169 ggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaa 230  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||| ||||||||    
T  55970123 ggggtccacttaaacattgagttcttaagtgagatcctaggtcatagaagacc-ctaaaaaa 55970063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 1586374 - 1586306
Alignment:
Q  236 ccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    ||||||||||| ||| || ||| |||||||||||||||  ||||||||  ||||||||||||| |||||    
T  1586374 ccacaatggaggtacctaataggtaccggatcttaaatggttaagacctcaccattgtggatgatctaa 1586306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 8824933 - 8824842
Alignment:
Q  190 gtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagac 282  Q
    ||||||||| ||||||  | ||||| |||||| || ||||| |||||| || ||||||||| || ||| |||||||||||||||| |||||||    
T  8824933 gtcttaagtaagatcccggatcttataagacc-ctgaaaaaattctcctcactggagatacctaataggtaccggatcttaaatagttaagac 8824842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 39055114 - 39055021
Alignment:
Q  209 gtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
    |||||| |||||||  |||||| ||| || |||||||||||| || ||| |||||| | ||||||  |||||||||| ||||||  ||||||||    
T  39055114 gtcttataagaccttaaaaaaaattcaccccaatggagatacctaataggtaccgggttttaaatgtttaagaccctcccattggagatggtct 39055021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 51654791 - 51654731
Alignment:
Q  221 ctctaaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagac 282  Q
    |||||||||||| || | ||||||||||||||| ||||||||| ||||||||  ||||||||    
T  51654791 ctctaaaaaatt-cttctcaatggagatacttaatagataccgaatcttaaaagattaagac 51654731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 30905661 - 30905809
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatt 255  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||   | ||||||| |||||||| ||||||||||| |||||||| | ||| ||||    
T  30905661 gcaaaagtaatgtgaggtccacttaagcattgaggtcttaagtgagacattgggtcttaaaagacctccaaaaaatttcttcacaatgggggtacctatt 30905760  T
Q  256 agataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    || || | | ||||||||| |||||||||||||||| ||||||||||||    
T  30905761 aggtatcagctcttaaatagttaagaccctaccattatggatggtctaa 30905809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 44104127 - 44104082
Alignment:
Q  157 caaaagtaatgtggggtccacttaagcattgatgtcttaagtgaga 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  44104127 caaaagtaatgtggggtccacttaagcattgaggtcttaagtgaga 44104082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 38937713 - 38937644
Alignment:
Q  237 cacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaata 306  Q
    |||||||||| ||| |||||  |||||  ||||||||| |||||||||||||||||| ||||||||||||    
T  38937713 cacaatggaggtacctattaagtaccgagtcttaaatagttaagaccctaccattgtagatggtctaata 38937644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 24845742 - 24845670
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaa 230  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||| |||  || ||| |||||| ||||||||    
T  24845742 aaaagtaatgtagggtccatttaagcattgaggtcttaagtgagaccctttgttttaaaagaccactaaaaaa 24845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 13629194 - 13629267
Alignment:
Q  227 aaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggt 300  Q
    |||||||||||||||| |   ||| ||||||||| || || ||||||| | ||||||||||||| |||||||||    
T  13629194 aaaatttctccacaataggtgtacctattagatatcgaattttaaatagtaaagaccctaccatcgtggatggt 13629267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 13729606 - 13729679
Alignment:
Q  227 aaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggt 300  Q
    |||||||||||||||| |   ||| ||||||||| || || ||||||| | ||||||||||||| |||||||||    
T  13729606 aaaatttctccacaataggtgtacctattagatatcgaattttaaatagtaaagaccctaccatcgtggatggt 13729679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 305
Target Start/End: Original strand, 4062724 - 4062864
Alignment:
Q  163 taatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagatacc 262  Q
    |||||||||||||||||||| ||||| ||||||||||||||||  |||||||||||||| |||||||||||||| |||||||||| || |||||| |||     
T  4062724 taatgtggggtccacttaagtattgaagtcttaagtgagatcccgggtcttagaagacccctaaaaaatttctctacaatggaga-acctattaggtaca 4062822  T
Q  263 ggatcttaaataattaagaccctaccattgtggatggtctaat 305  Q
    || | ||||||| |||| ||| |||||||||||||||||||||    
T  4062823 gg-ttttaaatagttaaaaccttaccattgtggatggtctaat 4062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 7772938 - 7773086
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatt 255  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||| ||| | |||| ||||||| | |||||||||||| |||||  | |||| ||||    
T  7772938 gcaaaagtaatgtggggtccgcttaagcattgaggtcttaaatgagaccctggatctttgaagaccccaaaaaaatttctctacaataaaaatacctatt 7773037  T
Q  256 agataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    ||||| | ||||||||||| |||||| | ||||||||| ||||||||||    
T  7773038 agatatcagatcttaaatagttaagatcataccattgttgatggtctaa 7773086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 43302247 - 43302175
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaat 231  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||  || |||||||||||||| |||||||||    
T  43302247 aaaagtaatgtggggtccacttaaacatcgatgtcttaagtgagactctgggtcttagaagacc-ctaaaaaat 43302175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 37348029 - 37348105
Alignment:
Q  225 aaaaaatttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
    |||| |||||||||||||| || ||| |||||||||||| || ||||||| |||||| |||||||||| |||||||||    
T  37348029 aaaacatttctccacaatgaaggtacctattagataccgaattttaaatagttaaga-cctaccattgcggatggtct 37348105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 448677 - 448721
Alignment:
Q  253 attagataccggatcttaaataattaagaccctaccattgtggat 297  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||    
T  448677 attaggtaccgggtcttaaatagttaagaccctaccattgtggat 448721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 15268339 - 15268276
Alignment:
Q  190 gtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatactta 253  Q
    ||||||||||||| ||||||||||| |||||| | |||   |||||||||||||||| ||||||    
T  15268339 gtcttaagtgagaccctaggtcttataagaccgcgaaactttttctccacaatggaggtactta 15268276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 16118069 - 16118115
Alignment:
Q  190 gtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctc 236  Q
    |||||||||||||  |||||||||| |||||||| ||||||||||||    
T  16118069 gtcttaagtgagacactaggtcttataagacctccaaaaaatttctc 16118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 11512062 - 11512191
Alignment:
Q  166 tgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattagataccgga 265  Q
    |||||||||||||||||  | |  ||||||||| ||| ||| |||||||  ||||| | ||||  ||| |||||| ||| | ||| |||||| ||||||     
T  11512062 tgtggggtccacttaagattgggggtcttaagttagaccctgggtcttaagagacccccaaaatttttttccacattgggggtacctattaggtaccggg 11512161  T
Q  266 tcttaaataattaagaccctaccattgtgg 295  Q
    ||||||||  | |||||||||||| |||||    
T  11512162 tcttaaatggtaaagaccctaccaatgtgg 11512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 298
Target Start/End: Original strand, 5495759 - 5495896
Alignment:
Q  157 caaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatta 256  Q
    ||||||||||||||| |||||||||||||| | ||||||| |||||  || |||||||||||||| | |||||||||||| ||||| ||| ||| |||||    
T  5495759 caaaagtaatgtgggatccacttaagcattaaggtcttaattgagactctgggtcttagaagacccccaaaaaatttctcaacaatcgaggtacgtatta 5495858  T
Q  257 gataccggatcttaaataattaagaccctaccattgtggatg 298  Q
    | |||||| |||||||    |||||||||| |||||||||||    
T  5495859 ggtaccgggtcttaaa----taagaccctatcattgtggatg 5495896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 13906105 - 13906251
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttatt 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||| |||||||| | ||||||    | ||||||| || ||  ||||    
T  13906105 gcaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagatcatgagtctcagaagaccccaaaaaaaacatttcacaatgaaggtatctatt 13906204  T
Q  256 agataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
    || ||  |||| ||||| | ||| |||||||||||||||||||||||    
T  13906205 aggtatgggattttaaaaagttaggaccctaccattgtggatggtct 13906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 13417466 - 13417539
Alignment:
Q  231 tttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    |||||||||| ||||| ||| |||||| |||||||||||||||  | |||||||||||  |||||||| |||||    
T  13417466 tttctccacattggaggtacatattaggtaccggatcttaaatggtaaagaccctaccgatgtggatgctctaa 13417539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 30471667 - 30471601
Alignment:
Q  236 ccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
    ||||||||||| ||| || ||| |||||||||||||||  ||||||||  |||||||||| ||||||    
T  30471667 ccacaatggaggtacctaataggtaccggatcttaaattgttaagacctcaccattgtggttggtct 30471601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 41521041 - 41521119
Alignment:
Q  225 aaaaaatttctccacaatggaga-tacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    |||||| |||||||||||| ||| ||| |||||| ||| || ||||||||  ||||||||||||||| |||||||||||||    
T  41521041 aaaaaaattctccacaatg-agagtacctattaggtacggg-tcttaaatggttaagaccctaccatagtggatggtctaa 41521119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 378911 - 378840
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaa 230  Q
    |||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||    
T  378911 aaaagtaatgtgtggtccacttaagcattgaggttttaagtgagaccctaggtcttagaagacc-ctaaaaaa 378840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 6794113 - 6794180
Alignment:
Q  237 cacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    |||||||| ||||| |||||| |||| | ||||||||  |||||||||| |||||||||||| |||||    
T  6794113 cacaatggggatacctattaggtaccaggtcttaaatgtttaagaccctcccattgtggatgctctaa 6794180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 17378686 - 17378829
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaatttctccacaatggagatacttattag 257  Q
    |||||| |||||||||| ||||||| || || ||||||||||||||| | |||||||  ||||| ||||    ||||| |||| ||| ||||| ||||||    
T  17378686 aaaagtgatgtggggtctacttaagaatggaggtcttaagtgagatcatgggtcttaagagacccctaacttttttct-cacattggggatacctattag 17378784  T
Q  258 ataccggatcttaaataattaagaccctaccattgtggatggtct 302  Q
     |||||| | ||||||  | |||||||||||| ||||||||||||    
T  17378785 gtaccgggttttaaatggtaaagaccctaccaatgtggatggtct 17378829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 52120127 - 52120189
Alignment:
Q  156 gcaaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaaga 219  Q
    |||||||||||  ||||||||||||| |||||| ||||||||||||| ||| ||||||||||||    
T  52120127 gcaaaagtaatacggggtccacttaaacattgaggtcttaagtgaga-cctgggtcttagaaga 52120189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 14477078 - 14477152
Alignment:
Q  230 atttctccacaatggagatacttattagataccggatcttaaataattaagaccctaccattgtggatggtctaa 304  Q
    |||| |||||||||| ||||| |||||| |||||| ||||||||  | ||||| || |||||||||||| |||||    
T  14477078 atttttccacaatggggatacatattaggtaccgggtcttaaatgttgaagactctcccattgtggatgctctaa 14477152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 40485220 - 40485292
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatg-tcttaagtgagatcctaggtcttagaagacctctaaaaaa 230  Q
    ||||||| |||| |||||||||||| ||  ||| |||||||||||||||| | |||||||||||||| ||||||    
T  40485220 aaaagtagtgtgaggtccacttaagaata-atgatcttaagtgagatcctcgatcttagaagacctccaaaaaa 40485292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 42400998 - 42400864
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctcta--aaaaatttctccacaatggagatacttatt 255  Q
    ||||||| ||||||||||||||||| ||    ||||||||||||| ||| |||||||||||||| | |  |||||||||||  |||||| | ||| ||||    
T  42400998 aaaagtagtgtggggtccacttaagaataagggtcttaagtgagaccctgggtcttagaagacccccaagaaaaatttctc--caatgggggtacctatt 42400901  T
Q  256 agataccggatcttaaataattaagaccctaccattg 292  Q
    || |||||| |||||||| || ||||||  |||||||    
T  42400900 aggtaccgggtcttaaatgatgaagacctcaccattg 42400864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 15457220 - 15457286
Alignment:
Q  163 taatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacctctaaaaaa 230  Q
    ||||||||||||||||||||||| || ||||||||| ||| ||| |||| ||||||||| ||||||||    
T  15457220 taatgtggggtccacttaagcatcgaggtcttaagttagaccctgggtcctagaagacc-ctaaaaaa 15457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 33780677 - 33780740
Alignment:
Q  158 aaaagtaatgtggggtccacttaagcattgatgtcttaagtgagatcctaggtcttagaagacc 221  Q
    ||||||| ||||| ||||||||||| || || |||||||||||||  ||| |||||||||||||    
T  33780677 aaaagtagtgtggagtccacttaagaatggaagtcttaagtgagactctaagtcttagaagacc 33780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 36297909 - 36297857
Alignment:
Q  233 tctccacaatggagatacttattagataccggatcttaaataattaagaccct 285  Q
    ||||| |||||||| ||| || |||||||||||| ||||||| ||||||||||    
T  36297909 tctccccaatggaggtacctaatagataccggattttaaatagttaagaccct 36297857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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