View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_14 (Length: 365)
Name: NF1780_high_14
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 196 - 358
Target Start/End: Original strand, 18110477 - 18110639
Alignment:
| Q |
196 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
295 |
Q |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
296 |
cagaattcctccaaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcatctca |
358 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaatggaatcagaaaatttgctgctacttcttctca |
18110639 |
T |
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Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 18110299 - 18110415
Alignment:
| Q |
18 |
accaaaacacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaaga |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110299 |
accaaagcacaaacaaatgaaaaggctcaaaagggtgaagaggaagtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaaga |
18110398 |
T |
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| Q |
118 |
tagtaggaatgagtgct |
134 |
Q |
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||||||||||||||||| |
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| T |
18110399 |
tagtaggaatgagtgct |
18110415 |
T |
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