View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_16 (Length: 360)
Name: NF1780_high_16
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 10982823 - 10982480
Alignment:
| Q |
1 |
taaaccgtagattctttttaacgaagttcaagtcatgcttacattgtcaacaaacacggtgccgaagttgccaacaatgttaataatcccaaaaactaag |
100 |
Q |
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| T |
10982823 |
taaaccgtagattatttg-aacgaatttcaagtcatgcttacattgtcaacaaacacggtgccgaagttgccaacaatgttaataatcccaaaaactaag |
10982725 |
T |
|
| Q |
101 |
ccacctgaactaagcattgttaagtaagagcctttgtgatttccactaacaggaccacaagattgcccatgatgtgatatgggatcttggcatgttcttg |
200 |
Q |
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| T |
10982724 |
ccacctgaactgagcattgttaagtaagagcctttgtgatttccactaacaggaccacaagattgcccatgatgtgatatgggatcttggcatgttcttg |
10982625 |
T |
|
| Q |
201 |
ttttgcttgcaacttcgagcaagcgattgtaaacaacactcggactaccaagctcactgctggaagtatagaccaggtacacaaaaatgaccaaaacaac |
300 |
Q |
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| T |
10982624 |
ttttgcttgcaacttcgagcaagcgattgtaaacaacactcggactaccaagctcactgctggaagtatagaccaggtacacaaaaatgaccaaaacaac |
10982525 |
T |
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| Q |
301 |
atgcactgaaaattgaaaacaaagaaatacacagtttaaggataa |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982524 |
atgcactgaaaattgaaaacaaagaaatacacagtttaaggataa |
10982480 |
T |
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