View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_17 (Length: 360)
Name: NF1780_high_17
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 1960293 - 1960629
Alignment:
| Q |
10 |
attattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataataaatcactgttttcatgttttctgatattt |
109 |
Q |
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| T |
1960293 |
attattcttaactttatttgataacttatgtatttgtctgtctgttcatcttgtttccattgcatataacaaatcactgttttcatgttttctgatattt |
1960392 |
T |
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| Q |
110 |
ttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtttagttatgaacaattttcgcaaaa |
209 |
Q |
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| T |
1960393 |
ttacattactaacaacataaagaaaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtttagttatgaacaattttcgcaaaa |
1960492 |
T |
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| Q |
210 |
gtgtgatgatattttcatacaattgacaccgatagcagataagactggtttttaaagccgaagcatttaagaatttacaaacaatggaaagatggttgca |
309 |
Q |
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| T |
1960493 |
gtgtgatgatattttcatacaattgacaccgatagcagataagactggtttttaaagccgaagcatctaagaatttacaaacaatggaaagatggttgca |
1960592 |
T |
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| Q |
310 |
tgtatgcagctaagcnnnnnnnatttattttcttctt |
346 |
Q |
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| T |
1960593 |
tatatgcagctaagctttatttatttattttcttctt |
1960629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 324
Target Start/End: Original strand, 5897143 - 5897338
Alignment:
| Q |
133 |
aaagtatgatgatttccatacaataaacagggatagtggaaaagactatggtttagttatgaacaattttcgcaaaagtgtgatgatattttcatacaat |
232 |
Q |
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| T |
5897143 |
aaagcatgatgatttccatacaatagacaccgatagtggataagactatggtttagttatgaagaacat--atacaagtgcgatg--atttccatataat |
5897238 |
T |
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| Q |
233 |
tgacaccgatagcagataagactggtttttaaagccgaag-------ca-tttaagaatttacaaacaatggaaagatggttgcatgtatgcagctaagc |
324 |
Q |
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| T |
5897239 |
agacactgatagcagataagactggtttttagagctgaagttgtttacattttaggaatttacaaacaatggacctatggttgtatgtatgcagctaagc |
5897338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 5897030 - 5897063
Alignment:
| Q |
15 |
tcttaactttatttgataacttatgtatttgtct |
48 |
Q |
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| T |
5897030 |
tcttaactttatttgatagcttatgtatttgtct |
5897063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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