View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_high_26 (Length: 303)

Name: NF1780_high_26
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_high_26
NF1780_high_26
[»] chr8 (11 HSPs)
chr8 (165-292)||(28707875-28708011)
chr8 (1-69)||(28707258-28707323)
chr8 (68-134)||(28723124-28723190)
chr8 (68-134)||(28730766-28730832)
chr8 (237-292)||(28723315-28723370)
chr8 (237-292)||(28730957-28731012)
chr8 (69-126)||(28707773-28707830)
chr8 (237-292)||(28623715-28623770)
chr8 (34-69)||(28723054-28723089)
chr8 (34-69)||(28730696-28730731)
chr8 (237-283)||(28736575-28736621)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 28707875 - 28708011
Alignment:
Q  165 aaaatagaaaggagtacaaatagtactaaacccaagtttagttggtaataaatccacccaa---------agaacactagtacatgttctttacttaaag 255  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||         ||||||||||||||||||| ||||||||||    
T  28707875 aaaatagaaaggagtacaaatagtactatacccaagtttagttggtaatagatccacccaaagacaccaaagaacactagtacatgttcattacttaaag 28707974  T
Q  256 aactccataacccagaaattacacacacgacattcat 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28707975 aactccataacccagaaattacagacacgacattcat 28708011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28707258 - 28707323
Alignment:
Q  1 tagtcatgaatcttaacaacttgcaacattatcagagagaacttcgatacatatgtaatttaaatattt 69  Q
    ||||||||||||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||    
T  28707258 tagtcatgaatcttaacaacttgtaacactat---agagaacttcgatacatatgtaatttaaatattt 28707323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 28723124 - 28723190
Alignment:
Q  68 ttgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcactagtttttt 134  Q
    ||||| ||||||||||| |||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  28723124 ttgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacactagtttttt 28723190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 28730766 - 28730832
Alignment:
Q  68 ttgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcactagtttttt 134  Q
    ||||| ||||||||||| |||||||  ||||||||||||||||||||||||||| ||||||||||||    
T  28730766 ttgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacactagtttttt 28730832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 28723315 - 28723370
Alignment:
Q  237 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat 292  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  28723315 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcat 28723370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 28730957 - 28731012
Alignment:
Q  237 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat 292  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  28730957 acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcat 28731012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 28707773 - 28707830
Alignment:
Q  69 tgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcact 126  Q
    |||||||||||||||| ||||||  || |||||||||||||||||||| |||||||||    
T  28707773 tgtaataagcaaacaagtaacccaatttgaaagaacttcgatcccatatagcagcact 28707830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 28623715 - 28623770
Alignment:
Q  237 acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat 292  Q
    ||||| ||||||||||||||||||||||||||| || ||||  |||| ||||||||    
T  28623715 acatgctctttacttaaagaactccataacccataagttacgaacacaacattcat 28623770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 28723054 - 28723089
Alignment:
Q  34 agagagaacttcgatacatatgtaatttaaatattt 69  Q
    |||||||||||| |||||||||||||||||||||||    
T  28723054 agagagaacttcaatacatatgtaatttaaatattt 28723089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 28730696 - 28730731
Alignment:
Q  34 agagagaacttcgatacatatgtaatttaaatattt 69  Q
    |||||||||||| |||||||||||||||||||||||    
T  28730696 agagagaacttcaatacatatgtaatttaaatattt 28730731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 28736575 - 28736621
Alignment:
Q  237 acatgttctttacttaaagaactccataacccagaaattacacacac 283  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||    
T  28736575 acatgttctttacttaaagaactccataacgtagaagttacagacac 28736621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University