View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_42 (Length: 235)
Name: NF1780_high_42
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4358788 - 4358578
Alignment:
| Q |
1 |
cgctacacgacactgacgccgacgccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaagattgaatcttgtt |
100 |
Q |
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| T |
4358788 |
cgctacacgacactgacgccgacgccgaggtggacaaggctgccgatgcattcataaggaggttctactcgcagttgaggaaacaagattgagtcttgtt |
4358689 |
T |
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| Q |
101 |
tcataattttgtttcttaacatttcttaatgttaattatgaattttggataatcttatgtctttgtggatgtaagagaggatgcttgttatttatgttga |
200 |
Q |
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| T |
4358688 |
tcatagttttgtttcttaacatttcttaatgttaattatgaattttggataatcttatgtctttgtggatgtaagagaggatgcttgttatttatgttga |
4358589 |
T |
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| Q |
201 |
ggacttaatat |
211 |
Q |
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||||||||||| |
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| T |
4358588 |
ggacttaatat |
4358578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 4353482 - 4353608
Alignment:
| Q |
1 |
cgctacacgacactgacgccgacgccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaagattgaatcttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4353482 |
cgctacacgacactgacgccgacgccgaggtggacaaggctgccgatgcattcataaggaggttctactcgcagttgaggaaacaagattgagtcttgtt |
4353581 |
T |
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| Q |
101 |
tcataattttgtttcttaacatttctt |
127 |
Q |
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| T |
4353582 |
tcatagttttgtttcttaacatttctt |
4353608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 4350113 - 4350213
Alignment:
| Q |
24 |
gccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaagattgaatcttgtttcataattttgtttcttaacatt |
123 |
Q |
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| T |
4350113 |
gccgaggtagacaaggctgccgaagcatttataaagaggttttacttgcagttgaagtaagaggatggagttttgtttcacaattttgtttcttaacatt |
4350212 |
T |
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| Q |
124 |
t |
124 |
Q |
| |
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| |
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| T |
4350213 |
t |
4350213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 4353612 - 4353659
Alignment:
| Q |
162 |
tttgtggatgtaagagaggatgcttgttatttatgttgaggacttaat |
209 |
Q |
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||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
4353612 |
tttgtggatgtaagagaggattcttgttattttttttgaggacttaat |
4353659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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