View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_44 (Length: 231)
Name: NF1780_high_44
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 38380799 - 38380894
Alignment:
| Q |
16 |
atgaactatcaacagcaacacatcacagattataaattcaaaaaataaaataacgaaagaaaggaagcgaacgaacctgggagcggaagcttcggt |
111 |
Q |
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| T |
38380799 |
atgaactatcaacagcaacacatcacagattataaattcaaaaaataaaataacgaaagaaacgaagcgaacgaacctgggagcggaagcttcggt |
38380894 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 38380941 - 38380988
Alignment:
| Q |
163 |
cgctcttgatctttt-gtccttcccgctaatggagagggacatgtggg |
209 |
Q |
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| T |
38380941 |
cgctcttgatctttttgtccttcccgctaatggagagggacatgtggg |
38380988 |
T |
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