View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_high_45 (Length: 227)

Name: NF1780_high_45
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_high_45
NF1780_high_45
[»] chr6 (2 HSPs)
chr6 (13-131)||(18810991-18811109)
chr6 (178-211)||(18810910-18810943)
[»] chr3 (1 HSPs)
chr3 (5-99)||(53762787-53762881)
[»] scaffold0230 (2 HSPs)
scaffold0230 (178-211)||(79-112)
scaffold0230 (101-131)||(1-31)
[»] chr8 (1 HSPs)
chr8 (181-210)||(28997662-28997691)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 18811109 - 18810991
Alignment:
Q  13 cagagaaatcatgtagcagagaacgaactcacgggaagaacaaccattgctattcattgaagtgactatgaaggtgagaagcgaagaagaataagggata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18811109 cagagaaatcatgtagcagagaacgaactcacgggaagaacaatcattgctattcattgaagtgactacgaaggtgagaagcgaagaagaataagggata 18811010  T
Q  113 catggattggatttggatt 131  Q
    |||||||||||||||||||    
T  18811009 catggattggatttggatt 18810991  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 18810943 - 18810910
Alignment:
Q  178 ttgggtttggattgaagaataaaggctaaaggtg 211  Q
    ||||||||||||||||||||||||||||||||||    
T  18810943 ttgggtttggattgaagaataaaggctaaaggtg 18810910  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 53762787 - 53762881
Alignment:
Q  5 aggaggagcagagaaatcatgtagcagagaacgaactcacgggaagaacaaccattgctattcattgaagtgactatgaaggtgagaagcgaaga 99  Q
    ||||||||| |||||||||||||||| ||||   |||||||||||| | ||  ||||||||||||||||| ||||| ||||| ||||||||||||    
T  53762787 aggaggagctgagaaatcatgtagcatagaaaatactcacgggaagtagaatgattgctattcattgaagagactacgaaggcgagaagcgaaga 53762881  T

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Target: scaffold0230 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 79 - 112
Alignment:
Q  178 ttgggtttggattgaagaataaaggctaaaggtg 211  Q
    ||||||||||||||||||||||||||||||||||    
T  79 ttgggtttggattgaagaataaaggctaaaggtg 112  T

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Target: scaffold0230; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 1 - 31
Alignment:
Q  101 gaataagggatacatggattggatttggatt 131  Q
    |||||||||||||||||||||||||||||||    
T  1 gaataagggatacatggattggatttggatt 31  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 28997662 - 28997691
Alignment:
Q  181 ggtttggattgaagaataaaggctaaaggt 210  Q
    ||||||||||||||||||||||||||||||    
T  28997662 ggtttggattgaagaataaaggctaaaggt 28997691  T

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