View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_47 (Length: 223)
Name: NF1780_high_47
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 25094921 - 25094731
Alignment:
| Q |
17 |
caattttagcattctcatttcctgnnnnnnnatgtttatttatgtttaaatatgaaactctgatgattaattttttggacttcaaccagttgtgtaaaga |
116 |
Q |
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| T |
25094921 |
caattttagcattctcatttcctgtttttttatgtttatttatgtttaaatatgaaactctgatgattaattttttggacttcaaccagttgtgtaaaga |
25094822 |
T |
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| Q |
117 |
ggccgccaaggaataacgaatcgtgtcgaatatattcagaagcatgtttggaactttgccgcgagatgaatatcaaggccattgatctgtg |
207 |
Q |
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| T |
25094821 |
ggccgccaaggaataacgaatcgtgtcgaatatattcagaagcatgtttggaactttgccgcgagatgaatatcaaggccattgatctgtg |
25094731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 25071418 - 25071357
Alignment:
| Q |
141 |
gtcgaatatattcagaagcatgtttggaactttgccgcgagatgaatatcaaggccattgat |
202 |
Q |
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| T |
25071418 |
gtcgaatatattcagaagcgtgtttggacatgtgttgtgagatgaaaatcaaggccattgat |
25071357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 5032356 - 5032304
Alignment:
| Q |
149 |
tattcagaagcatgtttggaactttgccgcgagatgaatatcaaggccattga |
201 |
Q |
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| T |
5032356 |
tattcagaagcatgtttggatttgtgccatgagatgaatgtcaaggccattga |
5032304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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