View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_5 (Length: 451)
Name: NF1780_high_5
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 19754963 - 19755375
Alignment:
| Q |
20 |
gaagactctgtgtcagtatttgaagggaggatattaccaaccaacataagatcaagggcctcaaaagggtcacgttctttcagcacatcaaactcctctt |
119 |
Q |
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| T |
19754963 |
gaagactctgtgtcagtatttgaagggaggatattaccaaccaacataagatcaagggcctcaaaagggtcacgttctttcagcacatcaaactcctctt |
19755062 |
T |
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| Q |
120 |
gacttatagtcacagtggtagaatttgtcactggagtaggagattttgtctttggagaatcttgtttagattcatctttagattctttgacatattcttt |
219 |
Q |
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||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755063 |
gacttattgtcacactggtagaatttgtcactcgagtaggagattttgtctttggagaatcttgtttagattcatctttagattctttgacatattcttt |
19755162 |
T |
|
| Q |
220 |
acgaccttccccatcagtgtcagtgtgctttgtatcatcttcagagttcaacccacgaggttctttactttttccaccttcgaccggagatggaccccct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
19755163 |
acgaccttccccatcagtgtcagtgtgctttgtatcatcttcagagttcaacccacgaggttctttactttttccactttcgaccagagatggaccccct |
19755262 |
T |
|
| Q |
320 |
tcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaagcattttctctcggtcttcatcatctt |
419 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19755263 |
tcattttcttcatcaatgtgttgttgatcatcttcaacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctt |
19755362 |
T |
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| Q |
420 |
tgggaggactaga |
432 |
Q |
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||||||||||||| |
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| T |
19755363 |
tgggaggactaga |
19755375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 8135228 - 8135128
Alignment:
| Q |
293 |
ccaccttcgaccggagatggacccccttcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaa |
392 |
Q |
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|||| |||||| |||||||||||||||| | ||| |||| | |||| || ||||||||||||| |||| | ||||| ||||||||| | | ||||||| |
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| T |
8135228 |
ccactttcgactagagatggacccccttcgtcttcctcatcagtgtgatgctgatcatcttcaatacttctggcatttgaatcttgagaatgatcagaaa |
8135129 |
T |
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| Q |
393 |
g |
393 |
Q |
| |
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| T |
8135128 |
g |
8135128 |
T |
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