View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_high_6 (Length: 448)
Name: NF1780_high_6
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 4358761 - 4359187
Alignment:
| Q |
15 |
tcggcgtcggcgtcaatgtcgtgtagcggaaagggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaag |
114 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4358761 |
tcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaag |
4358860 |
T |
|
| Q |
115 |
cctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagt |
214 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
4358861 |
cttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagc |
4358960 |
T |
|
| Q |
215 |
acacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358961 |
acacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtg |
4359060 |
T |
|
| Q |
315 |
tcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
414 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359061 |
tcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
4359160 |
T |
|
| Q |
415 |
tgaggtccatcattagttttccctttg |
441 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4359161 |
tgaggtccatcattagttttccctttg |
4359187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 4353509 - 4353084
Alignment:
| Q |
15 |
tcggcgtcggcgtcaatgtcgtgtagcggaaagggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaag |
114 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4353509 |
tcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaag |
4353410 |
T |
|
| Q |
115 |
cctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagt |
214 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
4353409 |
cttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagc |
4353310 |
T |
|
| Q |
215 |
acacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353309 |
acacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtg |
4353210 |
T |
|
| Q |
315 |
tcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
414 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||| |
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| T |
4353209 |
tcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgt |
4353111 |
T |
|
| Q |
415 |
tgaggtccatcattagttttccctttg |
441 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
4353110 |
tgaggtccatcattagttttccctttg |
4353084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 441
Target Start/End: Complemental strand, 4350083 - 4349697
Alignment:
| Q |
64 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
163 |
Q |
| |
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|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
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| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
164 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
254 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
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| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
255 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
354 |
Q |
| |
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||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
355 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttg |
4349697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 441
Target Start/End: Original strand, 43475430 - 43475556
Alignment:
| Q |
321 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
414 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
415 |
tgaggtccatcattagttttccctttg |
441 |
Q |
| |
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| ||| ||||||||||||| ||||||| |
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| T |
43475530 |
ttaggcccatcattagtttgccctttg |
43475556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 43486106 - 43486175
Alignment:
| Q |
372 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
441 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttg |
43486175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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