View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_10 (Length: 430)
Name: NF1780_low_10
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 85 - 412
Target Start/End: Complemental strand, 35834942 - 35834615
Alignment:
| Q |
85 |
ggggggttagtagccactcaatggcgcgaaagcaaagggaagaggaagaaagtgccgaagttgaaggcaagcttgaagaatgttcaatcgcattcacttt |
184 |
Q |
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| T |
35834942 |
ggggggttagtagccactcaatggcgcgaaagcaaagggaagaggaagaaagtgccgaagttgaaggccagcttgaagaatgttgaatcgcattcactta |
35834843 |
T |
|
| Q |
185 |
cactttcatttctctcaaaaattcatcaaaaatggcttttcgctttcaacatttccataaccgtcaccgattcctttttcttctcttcaattcatgaacc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834842 |
cactttcatttctctcaaaaattcatcaaaaatggcttctcgctttcaacatttccataaccgtcaccgattcctttttcttctcttcaattcatgaacc |
35834743 |
T |
|
| Q |
285 |
aattttctcacacaacccttccaacttagacctctaccatggtacgtacgtactttctcttattcttctattagcttggattcaaattcatcatgtcttg |
384 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
35834742 |
aattttctcacacaacccttccaacttagacctctgccatggtacgtacgtaatttctcttattcttctattagtttggattcaaattcatcatgtcgtg |
35834643 |
T |
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| Q |
385 |
ttattctttgtaatgccgccgatcctcc |
412 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35834642 |
ttattctttgtaatgccgccgatcctcc |
35834615 |
T |
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