View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_16 (Length: 364)
Name: NF1780_low_16
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 40042628 - 40042975
Alignment:
| Q |
7 |
ggttccacattgatccctaacagacactcggaaacaatgctaaatgtaagaactttcgtcgagcggtagagactaatctcttcttgaccttgccagtttt |
106 |
Q |
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| T |
40042628 |
ggttccacattgatccctaacaaacactcgaaaacaatgctaaatgtaagaactttcgtcgagcggtagagactaatctcttcttgaccttgccagtttt |
40042727 |
T |
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| Q |
107 |
tagataaatacaatttaacaaagttgcataactttggaactaatgtttctagtccagcatagccaaaactagtgccgataacgcctcgtaggaagcggtg |
206 |
Q |
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| T |
40042728 |
tagataaatacaatttaacaaagttgcataactttggaactaatgtttctagtccagcatagccaaaactagtgccgataacgcctcgtaggaagcggtg |
40042827 |
T |
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| Q |
207 |
tctttcgccgtctttctccatgatagagtccgttcccatgagatgaactgcggaagaaggcctagagcttttgaccagcttgaactcattggacaaaata |
306 |
Q |
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| T |
40042828 |
tctttcgccgtctttctccatgatagagtcctttcccatgagatgaactgaggaagaaggccaagagctttttaccagcttgaactcattggacaaaata |
40042927 |
T |
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| Q |
307 |
aacttatttgcctcagctccatttactatcacagttggtgaccctatg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40042928 |
aacttatttgcctcagctccatttactatcacagttggtgaccctatg |
40042975 |
T |
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