View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_2 (Length: 524)
Name: NF1780_low_2
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Original strand, 3950021 - 3950422
Alignment:
| Q |
22 |
agagtcacaaatacaacataaaactcacacccataactccgaggtcttgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
121 |
Q |
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| T |
3950021 |
agagtcacaaatacaacataaaactcacacccataactccgaggtctcgggttggaacacaggtaaagaggtccaacctatcaatatcggtattgtcagt |
3950120 |
T |
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| Q |
122 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950121 |
taagctaaactttacaagctcgtggtaagaaaataatagtactaattgagttttgtgttaattttgatgaattttttctcttaaatgatttttattgcaa |
3950220 |
T |
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| Q |
222 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtatttttgcagtgacaacaatgattttgaat |
321 |
Q |
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| T |
3950221 |
agttctgtgggaattatccccattcatcgccatatccaaccatgaatttggatcctttcagtgtgtttgtagttttgcagtgacaacaatgattttgaat |
3950320 |
T |
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| Q |
322 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
421 |
Q |
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| T |
3950321 |
gaatttattctgtaaaattgggtttacttgtaagtgagttgtatgaagtgatttatgtttagtacaaaaatgacgttttgagtcaagttataattaattt |
3950420 |
T |
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| Q |
422 |
ta |
423 |
Q |
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|| |
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| T |
3950421 |
ta |
3950422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 417 - 507
Target Start/End: Original strand, 3950624 - 3950714
Alignment:
| Q |
417 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttc |
507 |
Q |
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| T |
3950624 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttc |
3950714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 44090615 - 44090562
Alignment:
| Q |
86 |
aaagaggtccaacctatcaatatcggtattgtcagttaagctaaactttacaag |
139 |
Q |
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| T |
44090615 |
aaagatgttcaacctaacaatatcagtattgtcagttgatctaaactttacaag |
44090562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 25026127 - 25026159
Alignment:
| Q |
314 |
ttttgaatgaatttattctgtaaaattgggttt |
346 |
Q |
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| T |
25026127 |
ttttgaatgaattgattctgtaaaattgggttt |
25026159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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