View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_22 (Length: 332)
Name: NF1780_low_22
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 52941255 - 52941527
Alignment:
| Q |
48 |
gaggttgacatgcatggtaaacgacatctgcatctccataatcatggagagacatatgaaatgaattgtcctaatttcttattcagatttcttccaattc |
147 |
Q |
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| T |
52941255 |
gaggttgacatgcatggtaaacgacatctgcatctccataatcatggagagacatatgaaatgaattgtcctaatttcttattcagatttcttccaattc |
52941354 |
T |
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| Q |
148 |
ctggtattgattgggttggcaatgtcactatccggtgcctagaaacaggccttgtagcagaattaagctacattagacaatctttctttggatttgggtc |
247 |
Q |
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| T |
52941355 |
ctggtattgattgggttggcaatgtcactatccggtgcctagaaacaggccttgtagcagaattaagctacattagacaatctttctttggatttgggtc |
52941454 |
T |
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| Q |
248 |
gggaaatcgaagacggataaaagggaagatctttgattcattaacaaagaatgttctttataaagttgatggt |
320 |
Q |
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| T |
52941455 |
gggaaatcgaagacggataaaagggaagatctttgattcattaacaaagaatgttctttataaagttgatggt |
52941527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 16355932 - 16355775
Alignment:
| Q |
87 |
aatcatggagagacatatgaaatgaattgtcctaatttcttattcagatttcttccaattcctggtattgattgggttggcaatgtcactatccggtgcc |
186 |
Q |
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| T |
16355932 |
aatcatggagaaacatatgaaatgaattctccaaatctctttataagaattcttcctgttactggagttgattggattgggaatgtcaacatcaggtgta |
16355833 |
T |
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| Q |
187 |
tagaaacaggccttgtagcagaattaagctacattagacaatctttctttggatttgg |
244 |
Q |
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| T |
16355832 |
tagaaacaggtcttgtggccgagttaagttacataagtcaatcattctttggatttgg |
16355775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 16366775 - 16366658
Alignment:
| Q |
88 |
atcatggagagacatatgaaatgaattgtcctaatttcttattcagatttcttccaattcctggtattgattgggttggcaatgtcactatccggtgcct |
187 |
Q |
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||||||| || |||||||| ||||||| |||||| | || || ||| |||||||| |||||||| |||||||||||||| ||| ||| ||||| | |
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| T |
16366775 |
atcatggggaaacatatgagatgaattctcctaaccttttctttagaattcttccagttcctggtgctgattgggttggcactgttgatataaggtgcat |
16366676 |
T |
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| Q |
188 |
agaaacaggccttgtagc |
205 |
Q |
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||| |||||||| ||||| |
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| T |
16366675 |
agagacaggcctagtagc |
16366658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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