View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_24 (Length: 323)
Name: NF1780_low_24
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 5345411 - 5345682
Alignment:
| Q |
10 |
ataattctaaactcttgtatatgtttt-gttttgtactatgtttagttggtta-gtaactacgtgtaactactcctcctagtttctaacaagttagttag |
107 |
Q |
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| T |
5345411 |
ataattctaa-ctcttgtatatgtttttgatctgtaatatgtt-agttagttaagcaactacttgtaactgcttctcctagtttctagcaagttagttag |
5345508 |
T |
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| Q |
108 |
atataaggctttacttgtttcgcaagcaaaatagaaaacaagttgtatatatacatgattcaatgtgaataaag-ctatgtctcattccattacttctaa |
206 |
Q |
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| T |
5345509 |
atctaaggcattacttgtttcgcaagcaatagagaaaacaagttgtatatatactttattcaatgtgaataaagcctatgcctcattctattacttctaa |
5345608 |
T |
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| Q |
207 |
tctttttcactcatattcaatctgttatctttctccttcaattacaccaacaaagatcaatttgttcaccaaca |
280 |
Q |
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| T |
5345609 |
tctctttctctcatattcaatctgttatccttctctctcaattacacaaacaaagatcaatttgttcaccaaca |
5345682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 23693073 - 23693135
Alignment:
| Q |
10 |
ataattctaaactcttgtatatgttttgttttgtactatgtttagttggttagtaactacgtg |
72 |
Q |
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| T |
23693073 |
ataattctaaactcttgtatatgttttgttttgtactacgtttagttggttagtaaccacgtg |
23693135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 6518225 - 6518317
Alignment:
| Q |
188 |
ctcattccattacttctaatctttttcactcatattcaatctgttatctttctccttcaattacaccaacaaagatcaatttgttcaccaaca |
280 |
Q |
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| T |
6518225 |
ctcattctattacttctaatctctttctctcatactcaatttgttaaccttctctctcaattacacaaaccaagatcaatttgttcaccaaca |
6518317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 12832078 - 12832143
Alignment:
| Q |
112 |
aaggctttacttgtttcgcaagcaaaatagaaaacaagttgtatatatacatgattcaatgtgaataaa |
180 |
Q |
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| T |
12832078 |
aaggctttacttgttttgcaagcaa--tagaaaacaagttgcatatatacatgattc-atgtgaataaa |
12832143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 10334368 - 10334435
Alignment:
| Q |
112 |
aaggctttacttgtttcgcaagcaaaatagaaaacaagttgtatatatacatgattcaatgtgaataaagc |
182 |
Q |
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| T |
10334368 |
aaggctttacttattttgcaagcaa--tagaaaacaagttgtatatatacatgattc-atgtaaataaagc |
10334435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 12832010 - 12832062
Alignment:
| Q |
18 |
aaactcttgtatatgttttgttttgtactatgtt-tagttggttagtaactac |
69 |
Q |
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| T |
12832010 |
aaactcttgtatatgtgtttgtttgtactatgttctagttagttagtaactac |
12832062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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