View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_25 (Length: 322)
Name: NF1780_low_25
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 36306882 - 36307204
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaacnnnnnnnnnnnn--------atgatcac |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36306882 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaactatatatatatatatatataatgatcac |
36306981 |
T |
|
| Q |
93 |
gagacactaattataagtaaaaaactatatataatgatcatgagacagtaactataagggacctaaaagaacatgattagataaaatacattgtacaaca |
192 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36306982 |
gaaacactaattataagtaaaaaactaaatataatgatcatgagacagtaactataagggacctaaaagaacgtgattagataaaatacattgtacaaca |
36307081 |
T |
|
| Q |
193 |
acaa--------cnnnnnnntcttgataacaaaaaatagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatg |
284 |
Q |
| |
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| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36307082 |
aaaaaaaaaaagataatatatcttgataac-aaaaatagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatg |
36307180 |
T |
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| Q |
285 |
aaaggttaaatcggggaatgtttg |
308 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36307181 |
aaaggttaaatcggggaatgtttg |
36307204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36345979 - 36346296
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaacnnnnnnnnnnnnatgatcacgagacact |
100 |
Q |
| |
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||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||| ||||| | |||||||| |
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| T |
36345979 |
acaacttggttttcatccttattacgacaa-ttaagagtatcttgtgagatattatgaacacaataaaaaactatatatata--atgataatgagacact |
36346075 |
T |
|
| Q |
101 |
aattataagtaaaaaactatatataatgatcatgagacagtaactataag-ggacctaaaagaacatgattagataaaatacattgtacaac-------a |
192 |
Q |
| |
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|| ||||||||| || |||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
36346076 |
aacaataagtaaataattatatataatgatcatgagacaataaatataagaggaccaaaaagaacatgattagataaaatacattgtacaactaaaaaaa |
36346175 |
T |
|
| Q |
193 |
acaacnnnnnnntcttgat-aacaaaaa---atagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaag |
288 |
Q |
| |
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| | ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||| |
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| T |
36346176 |
aaagataatatatcttgatcaacaaaaaaatatagattataatattttgttaactaattgcgaggataaatggtcatcaacaacaattgagtaatgaaag |
36346275 |
T |
|
| Q |
289 |
gttaaatcggggaatgtttgt |
309 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
36346276 |
gttaaattggggaatgtttgt |
36346296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36309706 - 36310019
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaacnnnnnnnnnnnnatgatcacgagacact |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||| || |||||||| |
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| T |
36309706 |
acaacttggttttcatccttatttcaacaaattgaaagtatcttgtgagatattatgaacacagtcaaaaac--tatatatataatgaccatgagacact |
36309803 |
T |
|
| Q |
101 |
aattataagtaaaaaactatatataatgatcatgagacagtaactataag-ggacctaaaagaacatgattagataaaatacattgtac---aacaacaa |
196 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||| |||||||||| ||| | ||| |||||| ||||||||||||||||||||| || || | |
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| T |
36309804 |
aactataagtcaaaaactatatataatgatcatgagacgctaactataagaggatcaaaaggaacataattagataaaatacattgtacataaaaaaaag |
36309903 |
T |
|
| Q |
197 |
cnnnnnnntcttgat---aacaaaaaatagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaaggttaa |
293 |
Q |
| |
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|||| || || ||| || |||| || |||||||||||||||||||||||||||||||||||||| || ||||| || |||||| |||||| |
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| T |
36309904 |
ataatatatcttcatcgaaaaaaagaaaagaatattatattttgttaactaattgcgaggataattggtcatcagcacctattgagtaatgaatggttaa |
36310003 |
T |
|
| Q |
294 |
atcggggaatgtttgt |
309 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
36310004 |
attggggaatgtttgt |
36310019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36324323 - 36324640
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaacnnnnnnnnnnnnatgatcacgagacact |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| || |||||||| |
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| T |
36324323 |
acaacttggttttcatccttatttcaacaaattgaaagtatcttgtgagatatgatgaacacaataaaaaactatatatata--atgaccatgagacact |
36324420 |
T |
|
| Q |
101 |
aattataagtaaaaaactatatataatgatcatgagacagtaactataag-ggacctaaaagaacatgattagataaaatacattgtacaacaacaacnn |
199 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||| |||||||||| || || |||||| | || |||||||||||||||||||||||| || |
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|
| T |
36324421 |
aactataagtcaaaaactatatataatgatcatgagacgctaactataagaggtccagaaagaatacgagtagataaaatacattgtacaacaaaaaaag |
36324520 |
T |
|
| Q |
200 |
nnnnn------tcttgat-aacaaaaaa---tagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaagg |
289 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||| || ||||| || ||||||||| |
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| T |
36324521 |
aagataatatatcttgatcaacaaaaaaatatagaatataatattttgttaactaattgcaaggataattggttatcagcatctattgagtaatgaaagg |
36324620 |
T |
|
| Q |
290 |
ttaaatcggggaatgtttgt |
309 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
36324621 |
ttaaattggggaatgtttgt |
36324640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36338208 - 36338397
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaacacaatcaaaaacnnnnnnnnnnnnatgatcacgagacact |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||| |||||||| |||||||||||||||| | ||||||| |||||||| |
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|
| T |
36338208 |
acaacttggttttcatgcttattacgacaaattaagagtatcttatgagatatgatgaacacaatcaaaatctatatatatataatgatcatgagacact |
36338307 |
T |
|
| Q |
101 |
aattataagtaaaaaactatatataatgatcatgagacagtaactataag-ggacctaaaagaacatgattagataaaatacattgtaca |
189 |
Q |
| |
|
|| |||||| || ||| ||||||||||||||||||||| ||| |||||| ||||| |||||||||| |||||||| | ||||||||||| |
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|
| T |
36338308 |
aactataagcaacaaataatatataatgatcatgagacactaaatataagaggaccaaaaagaacattattagatagagtacattgtaca |
36338397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 36328187 - 36328275
Alignment:
| Q |
221 |
tagaagataatattttgttaactaattgcgaggataattggtcatcaacaactattaagcaatgaaaggttaaatcggggaatgtttgt |
309 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
36328187 |
tagaatataatattttgctagctaattgcgaggataataggtcatcaacaactattgagacatgaaaggttaaattggggaatgtttgt |
36328275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36328008 - 36328066
Alignment:
| Q |
1 |
acaacttggttttcatccttattacaacaaattgagagtatcttgtgagatattatgaa |
59 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
36328008 |
acaacttggttttcatccttgttacaacaaattaagagtatcttgtgagatatgatgaa |
36328066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 36338439 - 36338495
Alignment:
| Q |
215 |
aaaaaatagaagataatattttgttaactaattgcgaggataattggtcatcaacaa |
271 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
36338439 |
aaaatatagaatataatattttgttaagtaattgcgaggataattggtcattaacaa |
36338495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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