View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_26 (Length: 310)

Name: NF1780_low_26
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_26
NF1780_low_26
[»] chr4 (1 HSPs)
chr4 (168-293)||(39292080-39292209)
[»] chr1 (4 HSPs)
chr1 (24-65)||(22388203-22388244)
chr1 (24-66)||(18091194-18091236)
chr1 (24-65)||(41573297-41573338)
chr1 (24-65)||(43840353-43840394)
[»] chr8 (3 HSPs)
chr8 (24-66)||(7553670-7553712)
chr8 (24-66)||(26886070-26886112)
chr8 (24-60)||(33482177-33482213)
[»] chr7 (2 HSPs)
chr7 (24-66)||(20762831-20762873)
chr7 (25-65)||(35222916-35222956)
[»] chr3 (2 HSPs)
chr3 (24-65)||(7827500-7827541)
chr3 (24-65)||(7829888-7829929)
[»] scaffold0143 (1 HSPs)
scaffold0143 (24-60)||(4463-4499)
[»] chr5 (1 HSPs)
chr5 (24-64)||(40445976-40446016)
[»] chr2 (1 HSPs)
chr2 (24-64)||(29896322-29896362)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 39292209 - 39292080
Alignment:
Q  168 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaattaattaat----gacatacacgattgatgttgtaaaa 263  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  264 caggtatatgatggctacacccggtgatga 293  Q
    ||||||||||||||||||||||||||||||    
T  39292109 caggtatatgatggctacacccggtgatga 39292080  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 22388203 - 22388244
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  22388203 tatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 18091236 - 18091194
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaaa 66  Q
    ||||||||||||||||||||| | |||| ||||||||||||||    
T  18091236 tatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 41573297 - 41573338
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  41573297 tatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 43840353 - 43840394
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  43840353 tatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 7553712 - 7553670
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaaa 66  Q
    ||||||||||||||| ||||| | |||||||||||||||||||    
T  7553712 tatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 26886070 - 26886112
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaaa 66  Q
    |||||||||||| || ||||||| |||||||||||||||||||    
T  26886070 tatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 33482177 - 33482213
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgag 60  Q
    |||||||||||||||||||||||  ||||||||||||    
T  33482177 tatgcattgtccctatcaactaagctaaactcacgag 33482213  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 20762873 - 20762831
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaaa 66  Q
    |||||||||| |||||||||| || ||||||||||||||||||    
T  20762873 tatgcattgttcctatcaactgaactaaactcacgaggacaaa 20762831  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35222956 - 35222916
Alignment:
Q  25 atgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  35222956 atgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7827541 - 7827500
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  7827541 tatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7829929 - 7829888
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggacaa 65  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  7829929 tatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

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Target: scaffold0143 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 4499 - 4463
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgag 60  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4499 tatgcattgtccctatcaactaagctaaactcacgag 4463  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 40446016 - 40445976
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggaca 64  Q
    |||||||||||| |||||||| | |||||||||||||||||    
T  40446016 tatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 29896322 - 29896362
Alignment:
Q  24 tatgcattgtccctatcaactaaattaaactcacgaggaca 64  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  29896322 tatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

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