View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_29 (Length: 297)
Name: NF1780_low_29
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 134 - 297
Target Start/End: Original strand, 42898504 - 42898670
Alignment:
| Q |
134 |
tacattgatatatattgatataggagcaggtacctagctagataaaatcaaacatttttgaaagaaagtggaaatttttagaattgaa---aattgaann |
230 |
Q |
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| T |
42898504 |
tacattgatatatattgatctaggagcaggtacctagctagataaaatcaaacatttttgaaagaaagtggaaatttttagaattgaaattaattgaatt |
42898603 |
T |
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| Q |
231 |
nnnnnaatgtactatctctctagttgttagtgcatgcttagattggtggtgaatttatcagaatcat |
297 |
Q |
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| T |
42898604 |
tttttaatgtactatctctctagttgttagtgcatgcttagattgatggtgaatttatcagaatcat |
42898670 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42898371 - 42898422
Alignment:
| Q |
12 |
aacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaagg |
63 |
Q |
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| T |
42898371 |
aacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaagg |
42898422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 5788772 - 5788725
Alignment:
| Q |
16 |
tgtggcacaagagaatacagatgtgactgtggaaccctcttctcaagg |
63 |
Q |
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| T |
5788772 |
tgtggcactagagaatatagatgtgactgtggaaccctcttctcaagg |
5788725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28496155 - 28496108
Alignment:
| Q |
16 |
tgtggcacaagagaatacagatgtgactgtggaaccctcttctcaagg |
63 |
Q |
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| T |
28496155 |
tgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaagg |
28496108 |
T |
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