View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_3 (Length: 500)

Name: NF1780_low_3
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_3
NF1780_low_3
[»] chr6 (6 HSPs)
chr6 (10-485)||(32297813-32298304)
chr6 (436-485)||(32299505-32299554)
chr6 (184-240)||(6751881-6751937)
chr6 (190-239)||(19369827-19369876)
chr6 (180-224)||(10031570-10031614)
chr6 (181-221)||(29711263-29711303)
[»] chr7 (4 HSPs)
chr7 (190-241)||(5937419-5937470)
chr7 (192-224)||(18678160-18678192)
chr7 (185-237)||(22801743-22801795)
chr7 (192-224)||(35238199-35238231)
[»] scaffold0314 (1 HSPs)
scaffold0314 (181-215)||(8949-8983)
[»] chr8 (2 HSPs)
chr8 (192-279)||(42874534-42874619)
chr8 (173-238)||(24295138-24295203)
[»] chr2 (2 HSPs)
chr2 (190-240)||(43586004-43586054)
chr2 (186-215)||(2356382-2356411)
[»] chr1 (4 HSPs)
chr1 (177-239)||(24462270-24462332)
chr1 (173-223)||(40317832-40317882)
chr1 (188-224)||(18946049-18946085)
chr1 (194-242)||(33313483-33313530)
[»] chr5 (1 HSPs)
chr5 (175-224)||(30080516-30080565)
[»] chr3 (1 HSPs)
chr3 (185-238)||(14338484-14338537)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 485
Target Start/End: Original strand, 32297813 - 32298304
Alignment:
Q  10 aagaatataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgtcgatggtgccggccttatag 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32297813 aagaaaataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgttgatggtgccggccttatag 32297912  T
Q  110 aagaatcataatctataatgtataaaccatgaacgcagacatgaacaccggacactgacatttacatgtcgacatcgatcaaattttgagaaaatgacat 209  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  32297913 aagaatcataatctataatgtataaaccacgaacacagacatgaacaccggacactgacatttacacgtcgacaccgatcaaattttgagaaaatgatat 32298012  T
Q  210 aattcattataatcagaaatgtcagtgtcggtgtacacgacacatatcagacacgagacacgcattcaat-aaaaaatgtcggtggaactgaagtcataa 308  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  32298013 aattcattataattagaaatgtcagtgtcagtgtacacgacacatatcagacacgagacacgcattcaataaaaaaatgtcgatggaactgaagtcataa 32298112  T
Q  309 tgatgtgtactaaaatactact---------------atcatttaaaccaaatgatgcttaaagaaagattaaaaacaatacataagacaatcaaagata 393  Q
    ||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32298113 tgatgtgtactaaaatactactatcgtttaaatccaaatcatttaaaccaaatgatgcttaaagaaagattaaaaaaaatacataagacaatcaaagata 32298212  T
Q  394 tggaaaactgataattgttcatgaaaaaatgttgaaccctaaaagcaaaaggataggtccacttatgggcagttgataaatgccacaatagt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  32298213 tggaaaactgataattgttcatgaaaaaatgttgaaccctaaaagtaaaaggataggtccacttacgggcaattgataaatgccacaatagt 32298304  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 32299505 - 32299554
Alignment:
Q  436 aagcaaaaggataggtccacttatgggcagttgataaatgccacaatagt 485  Q
    ||||||||||||||||||||| |  |||||||| ||||||||||||||||    
T  32299505 aagcaaaaggataggtccactaactggcagttgctaaatgccacaatagt 32299554  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 6751937 - 6751881
Alignment:
Q  184 tcgatcaaattttgagaaaatgacataattcattataatcagaaatgtcagtgtcgg 240  Q
    ||||| |||||||||||||||||||||||||| | |||||| || |||| |||||||    
T  6751937 tcgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgg 6751881  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 19369827 - 19369876
Alignment:
Q  190 aaattttgagaaaatgacataattcattataatcagaaatgtcagtgtcg 239  Q
    |||||||||||||||||||||||||| | |||||| || |||| ||||||    
T  19369827 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcg 19369876  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 10031570 - 10031614
Alignment:
Q  180 gacatcgatcaaattttgagaaaatgacataattcattataatca 224  Q
    |||| |||| |||||||||||||||||||||||||| | ||||||    
T  10031570 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 10031614  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 29711263 - 29711303
Alignment:
Q  181 acatcgatcaaattttgagaaaatgacataattcattataa 221  Q
    |||||||| | | ||||||||||||||||||||||||||||    
T  29711263 acatcgataataatttgagaaaatgacataattcattataa 29711303  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 5937470 - 5937419
Alignment:
Q  190 aaattttgagaaaatgacataattcattataatcagaaatgtcagtgtcggt 241  Q
    |||||||||||||||||||||||||| | |||||| || |||| ||||||||    
T  5937470 aaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggt 5937419  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  192 attttgagaaaatgacataattcattataatca 224  Q
    |||||||||||||||||||||||| ||||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 22801795 - 22801743
Alignment:
Q  185 cgatcaaattttgagaaaatgacataattcattataatcagaaatgtcagtgt 237  Q
    |||||||||||||||| |||||||||||||| | |||||| || |||| ||||    
T  22801795 cgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 22801743  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 35238231 - 35238199
Alignment:
Q  192 attttgagaaaatgacataattcattataatca 224  Q
    |||||||||||||||||||||||| ||||||||    
T  35238231 attttgagaaaatgacataattcaatataatca 35238199  T

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Target: scaffold0314 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 8949 - 8983
Alignment:
Q  181 acatcgatcaaattttgagaaaatgacataattca 215  Q
    |||||||| ||||||||||||||||||||||||||    
T  8949 acatcgataaaattttgagaaaatgacataattca 8983  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 42874534 - 42874619
Alignment:
Q  192 attttgagaaaatgacataattcattataatcagaaatgtcagtgtcggtgtacacgacacatatcagaca-cgagacacgcattcaat 279  Q
    |||||||||||||||||||||||| | |||||| || |||||||||   || |||| |||||| || |||| |||||||||| ||||||    
T  42874534 attttgagaaaatgacataattcaatgtaatcacaagtgtcagtgt---tggacacaacacatgtcggacatcgagacacgccttcaat 42874619  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 24295203 - 24295138
Alignment:
Q  173 acatgtcgacatcgatcaaattttgagaaaatgacataattcattataatcagaaatgtcagtgtc 238  Q
    |||||||||||||||| ||||| ||||||||||||| |||| | | |||||| || |||| |||||    
T  24295203 acatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgtc 24295138  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 43586054 - 43586004
Alignment:
Q  190 aaattttgagaaaatgacataattcattataatcagaaatgtcagtgtcgg 240  Q
    |||||||||||||||||||||||||| | |||||| || |||| |||||||    
T  43586054 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgg 43586004  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 2356411 - 2356382
Alignment:
Q  186 gatcaaattttgagaaaatgacataattca 215  Q
    ||||||||||||||||||||||||||||||    
T  2356411 gatcaaattttgagaaaatgacataattca 2356382  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 24462332 - 24462270
Alignment:
Q  177 gtcgacatcgatcaaattttgagaaaatgacataattcattataatcagaaatgtcagtgtcg 239  Q
    |||||||  ||||||||||||| |||||||||||||||| | |||||| || | |||||||||    
T  24462332 gtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagtttcagtgtcg 24462270  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 40317882 - 40317832
Alignment:
Q  173 acatgtcgacatcgatcaaattttgagaaaatgacataattcattataatc 223  Q
    |||||| ||||||| | |||||||||||||||| ||||||||| |||||||    
T  40317882 acatgtggacatcggtaaaattttgagaaaatggcataattcaatataatc 40317832  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 18946085 - 18946049
Alignment:
Q  188 tcaaattttgagaaaatgacataattcattataatca 224  Q
    |||||||||||||||||||||||||||| | ||||||    
T  18946085 tcaaattttgagaaaatgacataattcaatgtaatca 18946049  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 33313530 - 33313483
Alignment:
Q  194 tttgagaaaatgacataattcattataatcagaaatgtcagtgtcggtg 242  Q
    ||||||||||| |||||||||||| ||||||||| ||| ||||||||||    
T  33313530 tttgagaaaataacataattcattgtaatcagaagtgt-agtgtcggtg 33313483  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 30080565 - 30080516
Alignment:
Q  175 atgtcgacatcgatcaaattttgagaaaatgacataattcattataatca 224  Q
    |||||||||  ||| |||||||||||||||||||||||||| | ||||||    
T  30080565 atgtcgacactgataaaattttgagaaaatgacataattcaatgtaatca 30080516  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 14338537 - 14338484
Alignment:
Q  185 cgatcaaattttgagaaaatgacataattcattataatcagaaatgtcagtgtc 238  Q
    |||| ||||||||| |||||||||||||||| | |||||| ||||||| |||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtc 14338484  T

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