View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_30 (Length: 297)

Name: NF1780_low_30
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_30
NF1780_low_30
[»] chr3 (3 HSPs)
chr3 (13-282)||(54692490-54692759)
chr3 (17-255)||(54699858-54700093)
chr3 (23-282)||(54687919-54688172)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 54692490 - 54692759
Alignment:
Q  13 aatattcatctaatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaataca 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54692490 aatattcatctaatggttgagactattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaataca 54692589  T
Q  113 caactccattttctccaatttgttttggagatcattcacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgag 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54692590 caactccattttctccaatttgttttggagatcatttacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgag 54692689  T
Q  213 aaaattcactctcttctgccaatagtgagcaagaaactcttttattaggctgaattagctaggaaatgga 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54692690 aaaattcactctcttctgccaatagtgagcaagaaactcttttattaggctgaattagcttggaaatgga 54692759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 54699858 - 54700093
Alignment:
Q  17 ttcatctaatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaatacacaac 116  Q
    |||| ||||||||||||| ||||||||| ||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||||||  ||| ||    
T  54699858 ttcaactaatggttgaggatattaagaagtgagactctaattttaatgagacgcct-aaacaaaaactcaagcccttcttcaatgtcttgaaggcacgac 54699956  T
Q  117 tccattttctccaatttgttttggagatcattcacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgagaaaa 216  Q
    ||  |||||||||| | ||||||||||||||| |   ||||||  || ||| ||||| |||| |||||||| |||||||||||||||  ||||| |||||    
T  54699957 tctgttttctccaagtggttttggagatcattgatgccttcaacttttctattcttggtaaatacaaaggactgcaatgctacatcc--acttgggaaaa 54700054  T
Q  217 ttcactctcttctgccaatagtgagcaagaaactctttt 255  Q
    |||||| || |||| |||||||||||||| |||||||||    
T  54700055 ttcactttcatctgtcaatagtgagcaagcaactctttt 54700093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 54687919 - 54688172
Alignment:
Q  23 taatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaatacacaactccatt 122  Q
    |||||||||||  ||||||||| ||||||||| |||||||||||||||||  || |||||||||||||||||||| | ||||||||| ||  ||||   |    
T  54687919 taatggttgagaatattaagaagtgaaactctaattttaatgagacgcct-gaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgct 54688017  T
Q  123 ttctccaatttgttttggagatcattcacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgagaaaattcact 222  Q
    ||||| || |   ||||||||||||| |   ||||||  || ||| ||||| |||  | ||| || ||||||||| |||||  ||||| | |||||||||    
T  54688018 ttctctaagtgactttggagatcattgatggcttcaagttttctattcttggtaagtataaaagactgcaatgctccatcc--acttgggcaaattcact 54688115  T
Q  223 ctcttctgccaatagtgagcaagaaactcttttattaggctgaattagctaggaaatgga 282  Q
     || ||||||| ||| ||||| |||||||||   || ||||||||||||| |||||||||    
T  54688116 ttcatctgccactagggagcaggaaactctt---ttgggctgaattagcttggaaatgga 54688172  T

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