View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_32 (Length: 271)
Name: NF1780_low_32
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 31267542 - 31267774
Alignment:
| Q |
24 |
caaattaacatataccctctatagtgcataaattaaataatgtgtatgatgcatgcacnnnnnnnn-ctagttaatacatacgttgctatctaaaagtaa |
122 |
Q |
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| T |
31267542 |
caaattaacatataccctctatagtgcataaattaaataatgtgtatgatgcatgcactttttttttctagttaatacatacgttgctatctaaaagtaa |
31267641 |
T |
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| Q |
123 |
atgatttatcaaaaagatacattttattttgtctttggaatcttttttacagatgcaagagacaaagtacatgaagaaaagaattgtgaaaaaattgatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31267642 |
atgatttatcaaaaagatacattttattttgtctttggaatcttttttacagatgcaagagacaaagtacatgaagaaaagaattgtgaaaaaattgatg |
31267741 |
T |
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| Q |
223 |
ggtgtagaaaagtgggtttaaaaatgaggaatg |
255 |
Q |
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| T |
31267742 |
ggtgtagaaaagtgggtttaaaaatgaggaatg |
31267774 |
T |
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