View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_34 (Length: 260)

Name: NF1780_low_34
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_34
NF1780_low_34
[»] chr4 (6 HSPs)
chr4 (18-69)||(46306064-46306111)
chr4 (168-211)||(46025129-46025172)
chr4 (168-211)||(46262486-46262529)
chr4 (168-211)||(46306446-46306489)
chr4 (217-251)||(46025049-46025083)
chr4 (217-251)||(46306535-46306569)


Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 46306064 - 46306111
Alignment:
Q  18 aattgtattaaggaagctcctacaagtgtgatatatagattaatcgattcct 69  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  46306064 aattgtattaaggaagctcctacaagtgtg----atagattaatcgattcct 46306111  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 46025172 - 46025129
Alignment:
Q  168 tcataatttttatcgagttacaagacaacatgaatacaattttt 211  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46025172 tcataatttttatcaatatacaagacaacatgaatacaattttt 46025129  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 46262486 - 46262529
Alignment:
Q  168 tcataatttttatcgagttacaagacaacatgaatacaattttt 211  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46262486 tcataatttttatcaatatacaagacaacatgaatacaattttt 46262529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 46306446 - 46306489
Alignment:
Q  168 tcataatttttatcgagttacaagacaacatgaatacaattttt 211  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46306446 tcataatttttatcaatatacaagacaacatgaatacaattttt 46306489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 46025083 - 46025049
Alignment:
Q  217 caccaaccgcaagttctactgcatatgattcacgt 251  Q
    ||||||||||||||||||||||| |||||||||||    
T  46025083 caccaaccgcaagttctactgcacatgattcacgt 46025049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 46306535 - 46306569
Alignment:
Q  217 caccaaccgcaagttctactgcatatgattcacgt 251  Q
    ||||||||||||||||||||||| |||||||||||    
T  46306535 caccaaccgcaagttctactgcacatgattcacgt 46306569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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