View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_35 (Length: 257)

Name: NF1780_low_35
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_35
NF1780_low_35
[»] chr6 (5 HSPs)
chr6 (1-242)||(31602124-31602364)
chr6 (154-215)||(10682533-10682594)
chr6 (152-196)||(30775381-30775425)
chr6 (154-196)||(2844161-2844203)
chr6 (152-204)||(30349199-30349251)
[»] chr7 (8 HSPs)
chr7 (152-225)||(43598849-43598922)
chr7 (152-202)||(12879279-12879329)
chr7 (156-225)||(41159367-41159436)
chr7 (154-227)||(36725816-36725889)
chr7 (154-224)||(22790435-22790505)
chr7 (154-203)||(40160367-40160416)
chr7 (154-202)||(48252913-48252961)
chr7 (158-196)||(43692580-43692618)
[»] chr3 (6 HSPs)
chr3 (154-227)||(49644389-49644462)
chr3 (154-225)||(28939675-28939746)
chr3 (152-223)||(20809622-20809693)
chr3 (154-196)||(11467231-11467273)
chr3 (165-202)||(35496132-35496169)
chr3 (154-227)||(40793172-40793245)
[»] chr1 (7 HSPs)
chr1 (152-227)||(50428501-50428576)
chr1 (154-202)||(46823657-46823705)
chr1 (152-195)||(1035776-1035819)
chr1 (168-227)||(16679909-16679968)
chr1 (152-195)||(37457655-37457698)
chr1 (154-224)||(51613257-51613327)
chr1 (152-196)||(23571030-23571074)
[»] chr4 (9 HSPs)
chr4 (163-224)||(43264457-43264518)
chr4 (152-225)||(46382040-46382113)
chr4 (154-225)||(38567992-38568063)
chr4 (154-225)||(55875998-55876069)
chr4 (154-202)||(2681132-2681180)
chr4 (154-202)||(9268356-9268404)
chr4 (154-202)||(52327034-52327082)
chr4 (152-202)||(206290-206340)
chr4 (154-202)||(41377407-41377455)
[»] chr2 (5 HSPs)
chr2 (154-227)||(9104570-9104643)
chr2 (154-202)||(32914484-32914532)
chr2 (154-225)||(40095816-40095887)
chr2 (164-202)||(7395460-7395498)
chr2 (162-202)||(13081147-13081187)
[»] scaffold0015 (1 HSPs)
scaffold0015 (154-202)||(56613-56661)
[»] chr8 (2 HSPs)
chr8 (154-202)||(9682385-9682433)
chr8 (154-202)||(17312877-17312925)
[»] chr5 (5 HSPs)
chr5 (158-225)||(10523833-10523900)
chr5 (164-223)||(14593868-14593927)
chr5 (154-195)||(4925098-4925139)
chr5 (155-203)||(2907793-2907841)
chr5 (152-196)||(39060227-39060271)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 31602364 - 31602124
Alignment:
Q  1 atggtgcctctacttggcaccacatctttactactttctagatgtaaaaactaatatgaaattgattacaaatatgaatcagaatatgttgtgtggttta 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31602364 atggtgcctctacttggcaccacatctttactactttctatatataaaaactaatatgaaattgattacaaatatgaatcagaatatgttgtgtggttta 31602265  T
Q  101 ctgagatccattttagagttttcataagtggtattgataattnnnnnnnnntatagttgagttgtttaaataattgagaagtgtgaattaatataaaata 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||         |||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  31602264 ctgagatccattttagagttttcataagt-gtattgataattaaaaaaaaatataattgagatatttaaataattgagaagtgtgaattaatataaaata 31602166  T
Q  201 ttgagtgaggtccatatataccacccacttcaatgacataat 242  Q
    |||| ||||||| || ||||||||||||||||||||||||||    
T  31602165 ttgaatgaggtctatttataccacccacttcaatgacataat 31602124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 10682533 - 10682594
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccat 215  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||| |||| |||||||    
T  10682533 tagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccat 10682594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 30775425 - 30775381
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  30775425 tatagttgagtggtttaaataattgaaaagtgtgaagtaatataa 30775381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 2844161 - 2844203
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||    
T  2844161 tagttgagtggtttaaataattgggaagtgtgaagtaatataa 2844203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 30349251 - 30349199
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattga 204  Q
    |||| |||| ||||||||||| ||||||||| |||| |||||||| |||||||    
T  30349251 tataattgaattgtttaaatatttgagaagtatgaagtaatataatatattga 30349199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 43598849 - 43598922
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||  ||||||| |||||||||    
T  43598849 tatagttgagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccacc 43598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 12879329 - 12879279
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12879329 tatagttgtgttgtttaaataattgagaagtgtgaagtaatataaaatatt 12879279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 41159436 - 41159367
Alignment:
Q  156 gttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||||||||||  |||||| |||||||||    
T  41159436 gttgagttgtttaaataattggaaagtgtgaaataatataatatattgagtggcgtccatttataccacc 41159367  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 36725816 - 36725889
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    ||||||||| ||||||||||||||||||||| || |||||||||  ||| |||| | ||||| |||||||||||    
T  36725816 tagttgagtggtttaaataattgagaagtgtaaaataatataaagaattaagtgggatccatttataccaccca 36725889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 22790505 - 22790435
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccac 224  Q
    ||||||| |||||||||||||||| ||| || || ||||| ||||||||| ||||| ||||| ||||||||    
T  22790505 tagttgaattgtttaaataattgaaaagcgtaaaataatacaaaatattgtgtgagatccatttataccac 22790435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 40160367 - 40160416
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattg 203  Q
    |||||||||||||||||||||||||||| || || |||||||| ||||||    
T  40160367 tagttgagttgtttaaataattgagaagcgttaagtaatataatatattg 40160416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 48252913 - 48252961
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||||||||    
T  48252913 tagttgagtggtttaaataattggaaagtgtgaagtaatataaaatatt 48252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 43692580 - 43692618
Alignment:
Q  158 tgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  43692580 tgagtggtttaaataattgagaagtgtgaaataatataa 43692618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 49644389 - 49644462
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||| |||| ||||||| || ||||||||    
T  49644389 tagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccatttaaaccaccca 49644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 28939746 - 28939675
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||||  ||| |||| || |||||||||    
T  28939746 tagttgagtagtttaaataattgagaagtgtgaagtaatataatatattaggtggggtctatttataccacc 28939675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 20809693 - 20809622
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatatacca 223  Q
    ||||||| |||||||||||||||| | |||| |||| |||||||||||||| ||| | ||| || |||||||    
T  20809693 tatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatattaagtcaagtctatttatacca 20809622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 11467273 - 11467231
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  11467273 tagttgattggtttaaataattgagaagtgtgaagtaatataa 11467231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 35496169 - 35496132
Alignment:
Q  165 tttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  35496169 tttaaataattgagaagtgtgaagtaatataatatatt 35496132  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 40793245 - 40793172
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||||| ||||  |||   ||||| |||||||||||    
T  40793245 tagttgagtggtttaaataattgaaaagtgagaagtaatataaagtattacgtggaatccatttataccaccca 40793172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 50428501 - 50428576
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||  ||||| ||||| ||||| |||||||||||    
T  50428501 tatagttgagtgatttaaataattgagaagtgtgaagtaatataatttattgcgtgagatccatttataccaccca 50428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 46823657 - 46823705
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  46823657 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 46823705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 1035819 - 1035776
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatata 195  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||    
T  1035819 tatagtttagtggtttaaataattgagaagtgtgaaataatata 1035776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 16679968 - 16679909
Alignment:
Q  168 aaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    |||||||||||||||||||| |||||||| |||  | |||||||||||  ||||||||||    
T  16679968 aaataattgagaagtgtgaagtaatataatatacagggtgaggtccattgataccaccca 16679909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 37457698 - 37457655
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatata 195  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  37457698 tatagttgagtggttttaataattgagaagtgtgaaataatata 37457655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 51613327 - 51613257
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccac 224  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||| ||||  ||| | ||||| ||||||||    
T  51613327 tagttgagtggtttaaataattggaaagtgtgaagtaatataaattattatgtgggatccatttataccac 51613257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 23571030 - 23571074
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||||||||||||||||||||| || || |||||| ||||||||    
T  23571030 tatagttgagttgtttaaataatggaaaaatgtgaagtaatataa 23571074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 43264518 - 43264457
Alignment:
Q  163 tgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccac 224  Q
    ||||||||||||||||||||||||| |||||||| |||||  ||||||||||| ||||||||    
T  43264518 tgtttaaataattgagaagtgtgaagtaatataatatattaggtgaggtccatttataccac 43264457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 46382040 - 46382113
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    |||||| |||| |||||||||||||||||||||||| |||||||| ||||| |||  ||||||| |||||||||    
T  46382040 tatagtggagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccacc 46382113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 38567992 - 38568063
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||||||| |||||||||||||| ||||  ||| |||||||| ||||||||||||||||||  ||||||||    
T  38567992 tagttgagtggtttaaataattgaaaagtaagaagtaatataatatattgagtgaggtccattcataccacc 38568063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 55876069 - 55875998
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||||| | |||||||||||||||||||||||| |||||||| ||||| |||  ||||||| |||||||||    
T  55876069 tagttgaatagtttaaataattgagaagtgtgaagtaatataatatattaagtagggtccatttataccacc 55875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2681132 - 2681180
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  2681132 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 2681180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 9268404 - 9268356
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  9268404 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 9268356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 52327034 - 52327082
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    |||||||||  ||||||||||||| ||||||||| ||||||||||||||    
T  52327034 tagttgagtgatttaaataattgaaaagtgtgaagtaatataaaatatt 52327082  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 206290 - 206340
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||||| || | |||| ||||||||||||||    
T  206290 tatagttgaattgtttaaataattgaaaaatatgaaataatataaaatatt 206340  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 41377407 - 41377455
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||| |||||    
T  41377407 tagttgagtagttaaaataattgagaagtgggaagtaatataatatatt 41377455  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 9104643 - 9104570
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccaccca 227  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||   ||||  |||| |||||||||||    
T  9104643 tagttgagtggtttaaataattgagaattgtgaaataatataaaatattagatgagacccatttataccaccca 9104570  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 32914484 - 32914532
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  32914484 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaaatatt 32914532  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 40095816 - 40095887
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||||||| ||||||||||||||||||||| || |||||||| |||||   || ||||||| |||||||||    
T  40095816 tagttgagtagtttaaataattgagaagtgtaaagtaatataatatattagatggggtccatttataccacc 40095887  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 7395460 - 7395498
Alignment:
Q  164 gtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  7395460 gtttaaataattgaaaagtgtgaagtaatataaaatatt 7395498  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 13081147 - 13081187
Alignment:
Q  162 ttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||||||||||||| |||||| ||| ||||||||||    
T  13081147 ttgtttaaataattgagaaatgtgaaataacataaaatatt 13081187  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 56613 - 56661
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| ||||||||||||||||||||| || |||||||| |||||    
T  56613 tagttgagtggtttaaataattgagaagtgtaaagtaatataatatatt 56661  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 9682385 - 9682433
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  9682385 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 9682433  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 17312877 - 17312925
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatataaaatatt 202  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  17312877 tagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt 17312925  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 10523900 - 10523833
Alignment:
Q  158 tgagttgtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatataccacc 225  Q
    ||||| |||||||||||| | |||||| || ||||||||  ||||||||| ||||||| |||||||||    
T  10523900 tgagtggtttaaataattaaaaagtgtaaaataatataatgtattgagtggggtccatttataccacc 10523833  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 14593927 - 14593868
Alignment:
Q  164 gtttaaataattgagaagtgtgaattaatataaaatattgagtgaggtccatatatacca 223  Q
    ||||||||||||||||  |||||| |||||||| ||||||||||  |||||| |||||||    
T  14593927 gtttaaataattgagatttgtgaagtaatataatatattgagtggagtccatttatacca 14593868  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 4925139 - 4925098
Alignment:
Q  154 tagttgagttgtttaaataattgagaagtgtgaattaatata 195  Q
    ||||||||| |||||||||||||| ||||||||| |||||||    
T  4925139 tagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 2907841 - 2907793
Alignment:
Q  155 agttgagttgtttaaataattgagaagtgtgaattaatataaaatattg 203  Q
    |||||||||||||||||||||  ||| |||||| |||| ||||||||||    
T  2907841 agttgagttgtttaaataattaggaaatgtgaagtaatgtaaaatattg 2907793  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 39060271 - 39060227
Alignment:
Q  152 tatagttgagttgtttaaataattgagaagtgtgaattaatataa 196  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||    
T  39060271 tatagttgagtggtttaaataatcgaaaagtgtgaagtaatataa 39060227  T

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