View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_37 (Length: 254)
Name: NF1780_low_37
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_37 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 38864571 - 38864798
Alignment:
| Q |
9 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
108 |
Q |
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| T |
38864571 |
gagaagaacatgtttatactgccttccaatacttcgataaagataacaacgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
38864670 |
T |
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| Q |
109 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
208 |
Q |
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| T |
38864671 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
38864770 |
T |
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| Q |
209 |
catgagtataacatgcatgatggcaggt |
236 |
Q |
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| T |
38864771 |
catgagtataacatgcatgatggtaggt |
38864798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 38808818 - 38808595
Alignment:
| Q |
9 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
108 |
Q |
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| T |
38808818 |
gagaagaacatgtttatactgccttccaattcttcgataaagataacagcgggtaaagaaaa-ttaaataaatccgtaaaaccaacatggttggatatat |
38808720 |
T |
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| Q |
109 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
208 |
Q |
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| T |
38808719 |
atttgcccttcctttggatactaattg--ttcaaatcttctgatctcactgcttttccataattaggtacatcaccattgaagaactagagcaagctctc |
38808622 |
T |
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| Q |
209 |
catgagtataacatgcatgatggcagg |
235 |
Q |
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| T |
38808621 |
catgagtataacatgcatgacggcagg |
38808595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 73029 - 72968
Alignment:
| Q |
173 |
aggtacattaccattgaagaactagagcaagctctccatgagtataacatgcatgatggcag |
234 |
Q |
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| T |
73029 |
aggttcattaccactgaagaactagatcaagctctccgtgaatacaacatgcatgatggcag |
72968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 73206 - 73150
Alignment:
| Q |
9 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaa |
65 |
Q |
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| T |
73206 |
gagaagaacatctttacactgccttccaatactttgataaagataacagcgggtaaa |
73150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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