View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_4 (Length: 487)

Name: NF1780_low_4
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_4
NF1780_low_4
[»] chr3 (3 HSPs)
chr3 (11-457)||(29555247-29555693)
chr3 (156-287)||(50295459-50295586)
chr3 (53-165)||(50706403-50706514)
[»] chr1 (2 HSPs)
chr1 (152-253)||(19825121-19825221)
chr1 (210-253)||(2072461-2072504)
[»] chr7 (2 HSPs)
chr7 (217-275)||(46963923-46963981)
chr7 (217-274)||(44338199-44338256)
[»] chr4 (2 HSPs)
chr4 (217-275)||(16870560-16870618)
chr4 (210-264)||(54147572-54147626)
[»] chr2 (3 HSPs)
chr2 (217-275)||(8986122-8986180)
chr2 (223-293)||(38584277-38584347)
chr2 (152-220)||(38584140-38584208)
[»] chr5 (3 HSPs)
chr5 (217-274)||(24136719-24136776)
chr5 (210-274)||(11335480-11335543)
chr5 (152-264)||(9511733-9511841)
[»] chr8 (3 HSPs)
chr8 (85-156)||(41694893-41694964)
chr8 (217-274)||(20241876-20241933)
chr8 (217-274)||(20251134-20251191)
[»] chr6 (2 HSPs)
chr6 (210-284)||(21861953-21862027)
chr6 (270-318)||(28063835-28063883)


Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 29555693 - 29555247
Alignment:
Q  11 caaaggagatgagcatccaaagcagcagcaactgaagggaggaaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaacc 110  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  29555693 caaaggagatgagcatccaaaggagcaacaactgaagggaggaaaccatatcaaacaaaaccggaatcaaaccgaagagccaataaagggagaagtaacc 29555594  T
Q  111 aaaatgttcaaatatgcctttaatgagaactcttcacaaataaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaacta 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  29555593 aaaatgttcaaatatgcctttaatgagaactcttcacaaacaaattgtgatcacttgactaactaagcaactaaattgtgagcaattaactcaccaacta 29555494  T
Q  211 aacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagac 310  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555493 aacaatcaaatcaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagac 29555394  T
Q  311 aaattgaataacaccaatgcgaaccaatacgaatggagcaaaggagagacgcaatgagagacaaacaaaaaactgacccaagccacaccaaatcaattag 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555393 aaattgaataacaccaatgcgaaccaatacgaatggaacaaaggagagacgcaatgagagacaaacaaaaaactgacccaagccacaccaaatcaattag 29555294  T
Q  411 cttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29555293 cttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 29555247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 287
Target Start/End: Complemental strand, 50295586 - 50295459
Alignment:
Q  156 tgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaacatc 255  Q
    ||||| |||| ||||||| || |||  ||||||||||||||| || ||| ||  |||||||||    ||||||| ||||||||| |||||| |||||| |    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgagcacttgacccactaaacaaacaatca----aattgtgtgcactatctcaactcatccaacaac 50295491  T
Q  256 caaataaatcggaccaaactgaaccaaattaa 287  Q
    |||| |||| | ||||||| |||| |||||||    
T  50295490 caaacaaattgaaccaaacagaacgaaattaa 50295459  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 50706514 - 50706403
Alignment:
Q  53 aaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaata 152  Q
    |||||||||||||| ||| |  ||| |||  ||||||| |||| || |||||| | | ||||| |||||||||| ||| ||||||||||||||||||| |    
T  50706514 aaaccatatcaaaccaaatcgaaatcaaatagaagagcaaatagagagagaagca-cgaaaatattcaaatatgtcttcaatgagaactcttcacaaaca 50706416  T
Q  153 aattgtgatcact 165  Q
    |||| ||| ||||    
T  50706415 aattttgagcact 50706403  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 19825121 - 19825221
Alignment:
Q  152 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 251  Q
    ||||||||| |||| ||||| | || |||  |||||||||||||||| ||||||||| |||||| ||||| ||||||||||| |||||| ||||||| ||    
T  19825121 aaattgtgagcactcgactcgccaaacaaccaaattgtgagcactta-ctcaccaaccaaacaaacaaacaaattgtgagcattatcttgactcaccaaa 19825219  T
Q  252 ca 253  Q
    ||    
T  19825220 ca 19825221  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 2072461 - 2072504
Alignment:
Q  210 aaacaatcaaaccaattgtgagcactatcttaactcacccaaca 253  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||    
T  2072461 aaacaatcaaaccaatggtgagccctatcttgactcacccaaca 2072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 46963923 - 46963981
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 275  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  46963923 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 46963981  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 44338256 - 44338199
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 274  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  44338256 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 44338199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 16870618 - 16870560
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 275  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  16870618 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 16870560  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 54147626 - 54147572
Alignment:
Q  210 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaat 264  Q
    |||||| ||||||||||||||| |||||||| ||||||| |||| ||||| ||||    
T  54147626 aaacaaacaaaccaattgtgaggactatcttgactcacctaacaaccaaacaaat 54147572  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 8986180 - 8986122
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 275  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  8986180 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 8986122  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 38584277 - 38584347
Alignment:
Q  223 aattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaa 293  Q
    ||||||||||||||| || |||||||||||| ||||| |||| | |||||||| |||| ||| || |||||    
T  38584277 aattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaactaaaccgaataaaactaaa 38584347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 38584140 - 38584208
Alignment:
Q  152 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaa 220  Q
    ||||||||| ||||| |||||| || | |  ||||||||||||||| |||||||||| |||||| ||||    
T  38584140 aaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaa 38584208  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 24136776 - 24136719
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 274  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  24136776 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 24136719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 11335480 - 11335543
Alignment:
Q  210 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 274  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| ||||| |||| | |||||||    
T  11335480 aaacaaacaaaccaattgtgagcactatcttgactca-ccaacaaccaaacaaattgaaccaaac 11335543  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 9511841 - 9511733
Alignment:
Q  152 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 251  Q
    ||||||||| |||| ||||||| || |||   || ||||||||||  |||||||||    |||| ||||| ||||||||| |||||||||||||||| ||    
T  9511841 aaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaa----acaaacaaacgaattgtgaggactatcttaactcacctaa 9511746  T
Q  252 catccaaataaat 264  Q
    || ||||| ||||    
T  9511745 caaccaaacaaat 9511733  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 41694893 - 41694964
Alignment:
Q  85 aagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaataaatt 156  Q
    ||||||| ||| | ||||||  ||| ||| |||||||||||| ||||||||| ||||||||||||| |||||    
T  41694893 aagagcctatagaaggagaaccaactaaattgttcaaatatgtctttaatgataactcttcacaaacaaatt 41694964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 20241933 - 20241876
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 274  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20241933 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20241876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 20251134 - 20251191
Alignment:
Q  217 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 274  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20251134 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20251191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 21862027 - 21861953
Alignment:
Q  210 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaat 284  Q
    |||||| ||||||||||||||| ||||| || |||||| ||| | |||||||||| | |||||||  ||||||||    
T  21862027 aaacaaacaaaccaattgtgagaactattttgactcactcaaaaaccaaataaattgaaccaaacgaaaccaaat 21861953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 28063835 - 28063883
Alignment:
Q  270 caaactgaaccaaattaatctaaacaaaaccaaaccaagacaaattgaa 318  Q
    |||||||||||||||||| |  ||||||| |||||||| ||||||||||    
T  28063835 caaactgaaccaaattaaaccgaacaaaatcaaaccaatacaaattgaa 28063883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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