View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_40 (Length: 250)

Name: NF1780_low_40
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_40
NF1780_low_40
[»] chr2 (2 HSPs)
chr2 (74-250)||(5821371-5821547)
chr2 (60-90)||(5821563-5821593)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 5821547 - 5821371
Alignment:
Q  74 aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821547 aatttaggtatatttctaacacttagcgacaaattaaaataaagtgacattttgtcatctctttaatattgcgattcatctttttagtagttgacacttg 5821448  T
Q  174 ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaactgtttgaacaaggatcaaatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5821447 ataccattgtttcaaaaaattgaaactgagatgttttaagttcaactactttaaaccgtttgaacaaggatcaaatt 5821371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Complemental strand, 5821593 - 5821563
Alignment:
Q  60 ttacattgttttctaatttaggtatatttct 90  Q
    |||||||||||||||||||||||||||||||    
T  5821593 ttacattgttttctaatttaggtatatttct 5821563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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