View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1780_low_42 (Length: 236)
Name: NF1780_low_42
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_42 |
 | |
|
| [»] scaffold1819 (2 HSPs) |
| | |
|
| [»] scaffold1104 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 34406706 - 34406855
Alignment:
| Q |
1 |
agtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgtt--tat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34406706 |
agtaggagtttgtggtggctttataaccctttcaattatc--ccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgttcatat |
34406803 |
T |
|
| Q |
99 |
gggatgcttcaatgttgatttgga-tttggattaagagaggagttgcaattt |
149 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34406804 |
gcgatgcttccatgttgatttggattttggattaagagaggagttgcaattt |
34406855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 34710268 - 34710125
Alignment:
| Q |
3 |
taggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgtttatggga |
102 |
Q |
| |
|
|||||| ||| | ||| ||||||||| ||| | |||| | ||||| ||||||||| ||| ||||||||| |||||||||| | ||| |||| ||| || |
|
|
| T |
34710268 |
taggagattgcgatgggtttataaccttttgagttatattcccttcggtgatattgatg---tgttctctatagcctaaagagagttgttgttcatgaga |
34710172 |
T |
|
| Q |
103 |
tgcttcaatgttgatttggatttggattaagagaggagttgcaattt |
149 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34710171 |
tgcttccatgttgatttggatttggattaagagaggagttgcaattt |
34710125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 34713881 - 34713797
Alignment:
| Q |
65 |
tgttctctagagcctaaagataattgatgtttatgggatgcttcaatgttgatttggatttggattaagagaggagttgcaattt |
149 |
Q |
| |
|
||||||||||||||||| || | ||| |||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34713881 |
tgttctctagagcctaatgagagttgttgttcatgagatgcttccatgttgttttggatttggattaagagaggagttgcaattt |
34713797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 8547893 - 8547833
Alignment:
| Q |
143 |
gcaatttccttataaaaatttcaacacccttgtgatcaccatccagactctatctatctat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8547893 |
gcaatttccttataaaaatttcaacacccttgtgatcaccatccagactctatctatctat |
8547833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 878 - 941
Alignment:
| Q |
15 |
gtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
78 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
878 |
gtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 340 - 272
Alignment:
| Q |
10 |
ttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
78 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
340 |
ttgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 2400 - 2463
Alignment:
| Q |
15 |
gtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
78 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
2400 |
gtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
2463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 1862 - 1794
Alignment:
| Q |
10 |
ttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
78 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
1862 |
ttgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
1794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University