View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_43 (Length: 236)
Name: NF1780_low_43
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 9795753 - 9795909
Alignment:
| Q |
18 |
atttatatacgaaattctacaaagatgcatgggttagagtctagtttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagata |
117 |
Q |
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| T |
9795753 |
atttacatacgaaattctataaaaatgcacgggttagagtctagtttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagata |
9795852 |
T |
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| Q |
118 |
gatatagatagttagttaggaattaattaattgcctaattacttcagttcaagaaat |
174 |
Q |
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| T |
9795853 |
gatatagatagttagttaggaattaattaattgcctaattacttcaattcaagaaat |
9795909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 9755430 - 9755527
Alignment:
| Q |
62 |
tttgctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatagatagatatagatagttagttaggaattaattaattgcctaattactt |
161 |
Q |
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| T |
9755430 |
tttgctcaaaaagtcaaaaccacataatttaattaggcaaaatgaattgata----gatatagatagttagttatgaattaattaattgcctaattagtt |
9755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 9780493 - 9780541
Alignment:
| Q |
66 |
ctcaaaaagtcaaaaaatcttaacttaattaggcaaaatgaattgatag |
114 |
Q |
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| T |
9780493 |
ctcaaaaagtcaaaacctcagaatttaattaggcaaaatgaattgatag |
9780541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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