View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_44 (Length: 236)

Name: NF1780_low_44
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_44
NF1780_low_44
[»] chr2 (4 HSPs)
chr2 (1-221)||(5821133-5821353)
chr2 (135-220)||(5764210-5764295)
chr2 (135-220)||(5833533-5833618)
chr2 (1-63)||(5819567-5819628)
[»] chr6 (1 HSPs)
chr6 (135-220)||(29331236-29331321)
[»] chr4 (3 HSPs)
chr4 (143-199)||(51198046-51198102)
chr4 (135-201)||(51211570-51211636)
chr4 (143-199)||(51155531-51155587)
[»] chr1 (1 HSPs)
chr1 (143-186)||(38527192-38527235)
[»] chr3 (1 HSPs)
chr3 (135-220)||(49738538-49738623)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5821353 - 5821133
Alignment:
Q  1 tctagttaggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatcctttgacgaacatgatacatgcatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5821353 tctagttaggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcatagatgtaaatccttagacgaacatgatacatgcatgc 5821254  T
Q  101 atggtgttaacttgtcatacaagaaagaaacttgccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821253 atggtgttaacttgtcatacaagaaagaaacttgccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccac 5821154  T
Q  201 tggttgcttcagtgtcaaagt 221  Q
    |||||||||||||||||||||    
T  5821153 tggttgcttcagtgtcaaagt 5821133  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 5764295 - 5764210
Alignment:
Q  135 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaag 220  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||  || ||| |||||||||||||    
T  5764295 ccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaag 5764210  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 5833533 - 5833618
Alignment:
Q  135 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaag 220  Q
    ||||||||||||| || |||||||||||||| || |||||||||||||| ||||| ||||||||  || ||| |||||| ||||||    
T  5833533 ccttttctcccatagcctcttgaatgagaattgtgtcaccagacattctaccaattacctctcctgtgtttgtttcagtatcaaag 5833618  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5819628 - 5819567
Alignment:
Q  1 tctagttaggttcggtttttaaaaacattggttgatagtgccattggaataataaaatatcat 63  Q
    ||||||||||| ||||||||||||||| | |||||||||  |||||||||||||||| |||||    
T  5819628 tctagttaggt-cggtttttaaaaacactagttgatagtaacattggaataataaaacatcat 5819567  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 29331236 - 29331321
Alignment:
Q  135 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaag 220  Q
    ||||||||||||| || |||||||||||||| || |||||||||||||| | ||| ||||||||  || ||| |||||||||||||    
T  29331236 ccttttctcccatagcttcttgaatgagaattgtgtcaccagacattctactaattacctctcctgtgtttgtttcagtgtcaaag 29331321  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 51198102 - 51198046
Alignment:
Q  143 cccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctcca 199  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||| ||||||||||    
T  51198102 cccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctcca 51198046  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 51211636 - 51211570
Alignment:
Q  135 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact 201  Q
    |||| ||||||||||| |||||||| ||||  |||||||| ||||||||||||| |||||| |||||    
T  51211636 ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact 51211570  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 51155587 - 51155531
Alignment:
Q  143 cccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctcca 199  Q
    ||||||||||||| ||| ||||  |||||||| ||||| ||||||| ||||||||||    
T  51155587 cccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctcca 51155531  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 38527192 - 38527235
Alignment:
Q  143 cccatggcatcttgaatgagaatggtatcaccagacattcttcc 186  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  38527192 cccatggcatcttgaataagaacagtatcaccagacattcttcc 38527235  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 49738538 - 49738623
Alignment:
Q  135 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaag 220  Q
    |||| |||||||||||||||||||| ||||  || ||||| || |||||||||| ||||||  ||||| ||| |||  ||||||||    
T  49738538 ccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaacactgtttgtttccctgtcaaag 49738623  T

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